GCID Bacterial Projects

The long-term goals of this work are to improve our understanding of the changing nature of antibiotic resistance and to support development of molecular assays to improve diagnosis and treatment selection for infections. This will be pursued in two ways.

CRACKLE: Carbapenems in Klebsiella pneumoniae and Other Enterobacteriaceae

Multidrug-Resistant Klebsiella pneumoniae from Pediatric Sepsis Patients in Nigeria

Genomics of Non-Tuberculosis Mycobacteria

Genomic Analysis of Multidrug Resistance in Esbl-Positive and Carbapenem-Resistant Bacterial Pathogens

Influence of Genetic Variation and AMR in Enterobacter and E. coli Bloodstream Infections (BSI)

Kpc and Klebsiella Pneumoniae: Virulence and Resistance Converge

Genomics of Clostridium Botulinum and Clostridium Perfringens

Genomics of Staphylococcus Aureus to Determine the Genetic Basis for Drug Resistance

Evolutionary Genomics and Population Genetics of Pathogenic Streptococci

Genomics of Acinetobacter baumannii

Derrick E. Fouts, PhD

Professor

Indresh Singh, MS

Director of Informatics

Pratap Venepally, PhD

Sr. Bioinformatics Engineer

Leptospira Genomics and Human Health

Genome-scale Analysis of Shiga-toxin Producing E. Coli (Stec) O-serogroups

Genome Sequencing of Atypical Disease-associated and Emerging Infectious Disease Isolates of C. Jejuni, and Related Species

Burkholderia mallei Genome Project

Insights Into the Pathogenicity and Evolution of the Bacillus Cereus Group of Organisms

Genome Sequencing and Analysis of Additional Strains in the Burkholderia Cepacia Complex

Burkholderia Multivorans Genome Project

Comprehensive Genome Sequencing of Nontyphoidal Salmonellae

Genomic Sequencing of an Attenuated Yersinia Pestis Strain Implicated in the Death of a Researcher

Genome Analysis of the Human Erythrocyte Pathogen, Bartonella Bacilliformis

The Genetic Basis of Borrelia Burgdorferi Variations in Human Invasiveness and Enzootic Prevalence

Burkholderia Morphotype Genome Project

Coxiella Burnetii and Rickettsiella Grylli Genome Project

Burkholderia Pseudomallei Genome Project

Whole Genome Sequencing of E. Coli O157:h7 Isolates Involved in the Twenty-six State Outbreak

Comprehensive Genome Sequencing of Pathogenic Escherichia Coli and Shigella

Comparative Genomics of Pseudomonas Aeruginosa

Comparative Genome Sequencing of Streptococcus Pneumoniae

Complete Genomic Sequencing and Comparative Analysis of 14 Serovars of Ureaplasma

Vibrio Genome Project

Genomic Sequencing of an Atteexploring and Understanding Yersinia Pestis Evolutionary...

Genomic Analysis of the Classical Bordetella