Publications

Standards in genomic sciences. 2015-10-29; 10.89.
High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237
Fischer A, Santana-Cruz I, Hegerman J, Gourlé H, Schieck E, Lambert M, Nadendla S, Wesonga H, Miller RA, Vashee S, Weber J, Meens J, Frey J, Jores J
PMID: 26516405
Bioinformatics (Oxford, England). 2015-10-15; 31.20: 3380-2.
Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq
Juliá M, Telenti A, Rausell A
PMID: 26099264
Scientific reports. 2015-10-07; 5.14840.
Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach
Ishii S, Suzuki S, Tenney A, Norden-Krichmar TM, Nealson KH, Bretschger O
PMID: 26443302
Infection and immunity. 2015-10-01; 83.10: 4142-53.
Similar Neutrophil-Driven Inflammatory and Antibacterial Responses in Elderly Patients with Symptomatic and Asymptomatic Bacteriuria
Yu Y, Zielinski MD, Rolfe MA, Kuntz MM, Nelson H, Nelson KE, Pieper R
PMID: 26238715
The journal of trauma and acute care surgery. 2015-10-01; 79.4: 638-42.
A prospective analysis of urinary tract infections among elderly trauma patients
Zielinski MD, Kuntz MM, Polites SF, Boggust A, Nelson H, Khasawneh MA, Jenkins DH, Harmsen S, Ballman KV, Pieper R
PMID: 26402539
Infection and immunity. 2015-10-01; 83.10: 3982-8.
Acylation Enhances, but Is Not Required for, the Cytotoxic Activity of Mannheimia haemolytica Leukotoxin in Bighorn Sheep
Batra SA, Shanthalingam S, Munske GR, Raghavan B, Kugadas A, Bavanthasivam J, Highlander SK, Srikumaran S
PMID: 26216418
Nature. 2015-10-01; 526.7571: 122-5.
The soft palate is an important site of adaptation for transmissible influenza viruses
Lakdawala SS, Jayaraman A, Halpin RA, Lamirande EW, Shih AR, Stockwell TB, Lin X, Simenauer A, Hanson CT, Vogel L, Paskel M, Minai M, Moore I, Orandle M, Das SR, Wentworth DE, Sasisekharan R, Subbarao K
PMID: 26416728
Eukaryotic cell. 2015-10-01; 14.10: 983-97.
Transcriptome Analysis of Aspergillus flavus Reveals veA-Dependent Regulation of Secondary Metabolite Gene Clusters, Including the Novel Aflavarin Cluster
Cary JW, Han Z, Yin Y, Lohmar JM, Shantappa S, Harris-Coward PY, Mack B, Ehrlich KC, Wei Q, Arroyo-Manzanares N, Uka V, Vanhaecke L, Bhatnagar D, Yu J, Nierman WC, Johns MA, Sorensen D, Shen H, De Saeger S, Diana Di Mavungu J, Calvo AM
PMID: 26209694
BMC bioinformatics. 2015-09-22; 16.304.
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies
Standish KA, Carland TM, Lockwood GK, Pfeiffer W, Tatineni M, Huang CC, Lamberth S, Cherkas Y, Brodmerkel C, Jaeger E, Smith L, Rajagopal G, Curran ME, Schork NJ
PMID: 26395405
Journal of virology. 2015-09-01; 89.18: 9689-92.
Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008
Sam IC, Su YC, Chan YF, Nor'E SS, Hassan A, Jafar FL, Joseph U, Halpin RA, Ghedin E, Hooi PS, Fourment M, Hassan H, AbuBakar S, Wentworth DE, Smith GJ
PMID: 26136576

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