Publications

The Journal of general virology. 2015-08-01; 96.8: 2050-60.
Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data
Lewis NS, Verhagen JH, Javakhishvili Z, Russell CA, Lexmond P, Westgeest KB, Bestebroer TM, Halpin RA, Lin X, Ransier A, Fedorova NB, Stockwell TB, Latorre-Margalef N, Olsen B, Smith G, Bahl J, Wentworth DE, Waldenström J, Fouchier RA, de Graaf M
PMID: 25904147
Emerging infectious diseases. 2015-08-01; 21.8: 1330-8.
Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012
Pollett S, Nelson MI, Kasper M, Tinoco Y, Simons M, Romero C, Silva M, Lin X, Halpin RA, Fedorova N, Stockwell TB, Wentworth D, Holmes EC, Bausch DG
PMID: 26196599
Genome biology. 2015-07-21; 16.143.
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
Chan AP, Sutton G, Depew J, Krishnakumar R, Choi Y, Huang XZ, Beck E, Harkins DM, Kim M, Lesho EP, Nikolich MP, Fouts DE
PMID: 26195261
Standards in genomic sciences. 2015-07-18; 10.37.
High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae
Sizova MV, Chilaka A, Earl AM, Doerfert SN, Muller PA, Torralba M, McCorrison JM, Durkin AS, Nelson KE, Epstein SS
PMID: 26221418
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2015-07-01; 87.7: 591-3.
State-of-the-Art in the Computational Analysis of Cytometry Data
Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH
PMID: 26111230
Journal of virology. 2015-07-01; 89.13: 6860-73.
Equine and Canine Influenza H3N8 Viruses Show Minimal Biological Differences Despite Phylogenetic Divergence
Feng KH, Gonzalez G, Deng L, Yu H, Tse VL, Huang L, Huang K, Wasik BR, Zhou B, Wentworth DE, Holmes EC, Chen X, Varki A, Murcia PR, Parrish CR
PMID: 25903329
JMIR public health and surveillance. 2015-07-01; 1.2: e7.
Identifying Adverse Effects of HIV Drug Treatment and Associated Sentiments Using Twitter
Adrover C, Bodnar T, Huang Z, Telenti A, Salathé M
PMID: 27227141
The ISME journal. 2015-07-01; 9.7: 1648-61.
Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics
Llorens-Marès T, Yooseph S, Goll J, Hoffman J, Vila-Costa M, Borrego CM, Dupont CL, Casamayor EO
PMID: 25575307
Emerging microbes & infections. 2015-06-17; 4.e35.
Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?
Krauss S, Stucker KM, Schobel SA, Danner A, Friedman K, Knowles JP, Kayali G, Niles LJ, Dey AD, Raven G, Pryor P, Lin X, Das SR, Stockwell TB, Wentworth DE, Webster RG
PMID: 26954883
Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1833-5.
SFA-SPA: a suffix array based short peptide assembler for metagenomic data
Yang Y, Zhong C, Yooseph S
PMID: 25637561

Pages