Publications

Journal of dental research. 2020-07-01; 99.8: 969-976.
Caries-Associated Biosynthetic Gene Clusters in Streptococcus mutans
Momeni SS, Beno SM, Baker JL, Edlund A, Ghazal T, Childers NK, Wu H
PMID: 32298190
Molecular ecology. 2020-06-24; 29.11: 2080-2093.
Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location
Schulhof MA, Allen AE, Allen EE, Mladenov N, McCrow JP, Jones NT, Blanton J, Cavalheri HB, Kaul D, Symons CC, Shurin JB
PMID: 32578266
Scientific data. 2020-06-19; 7.1: 188.
COVID-19 pandemic reveals the peril of ignoring metadata standards
Schriml LM, Chuvochina M, Davies N, Eloe-Fadrosh EA, Finn RD, Hugenholtz P, Hunter CI, Hurwitz BL, Kyrpides NC, Meyer F, Mizrachi IK, Sansone SA, Sutton G, Tighe S, Walls R
PMID: 32561801
Nature communications. 2020-06-16; 11.1: 3132.
Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection
Kaul D, Rathnasinghe R, Ferres M, Tan GS, Barrera A, Pickett BE, Methe BA, Das SR, Budnik I, Halpin RA, Wentworth D, Schmolke M, Mena I, Albrecht RA, Singh I, Nelson KE, García-Sastre A, Dupont CL, Medina RA
PMID: 32546784
Frontiers in cellular and infection microbiology. 2020-06-09; 10.203.
Potent Tetrahydroquinolone Eliminates Apicomplexan Parasites
McPhillie MJ, Zhou Y, Hickman MR, Gordon JA, Weber CR, Li Q, Lee PJ, Amporndanai K, Johnson RM, Darby H, Woods S, Li ZH, Priestley RS, Ristroph KD, Biering SB, El Bissati K, Hwang S, Hakim FE, Dovgin SM, Lykins JD, Roberts L, Hargrave K, Cong H, Sinai AP, Muench SP, Dubey JP, Prud'homme RK, Lorenzi HA, Biagini GA, Moreno SN, Roberts CW, Antonyuk SV, Fishwick CWG, McLeod R
PMID: 32626661
Proceedings of the National Academy of Sciences of the United States of America. 2020-06-09; 117.23: 12522-12523.
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M
PMID: 32381734
The Journal of infectious diseases. 2020-06-03;
Necroptosis inhibition prevents long-term cardiac damage during pneumococcal pneumonia and invasive disease
Beno SM, Riegler AN, Gilley RP, Brissac T, Wang Y, Kruckow KL, Jadapalli JK, Wright GM, Shenoy AT, Stoner SN, Restrepo MI, Deshane JS, Halade GV, Gonzalez-Juarbe N, Orihuela CJ
PMID: 32492702
Molecular oral microbiology. 2020-06-01; 35.3: 118-128.
Streptococcus mutans SpxA2 relays the signal of cell envelope stress from LiaR to effectors that maintain cell wall and membrane homeostasis
Baker JL, Saputo S, Faustoferri RC, Quivey RG
PMID: 32043713
Nature communications. 2020-05-21; 11.1: 2537.
Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection
Kaul D, Rathnasinghe R, Ferres M, Tan GS, Barrera A, Pickett BE, Methe BA, Das SR, Das S, Budnik I, Halpin RA, Wentworth D, Schmolke M, Mena I, Albrecht RA, Singh I, Nelson KE, García-Sastre A, Dupont CL, Medina RA
PMID: 32439901
Genome biology. 2020-05-20; 21.1: 121.
Gapless assembly of maize chromosomes using long-read technologies
Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK
PMID: 32434565

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