Publications

Cell reports. Medicine. 2021-07-20; 2.7: 100355.
Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals
Tarke A, Sidney J, Methot N, Yu ED, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, Wang E, Frazier A, Ramirez SI, Rawlings SA, Smith DM, da Silva Antunes R, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A
PMID: 34230917
Briefings in bioinformatics. 2021-07-20; 22.4:
FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test
Zhang Y, Aevermann BD, Bakken TE, Miller JA, Hodge RD, Lein ES, Scheuermann RH
PMID: 33249453
Frontiers in physiology. 2021-07-19; 12.699253.
Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder
Hartmann P, Lang S, Zeng S, Duan Y, Zhang X, Wang Y, Bondareva M, Kruglov A, Fouts DE, Stärkel P, Schnabl B
PMID: 34349667
The Journal of antimicrobial chemotherapy. 2021-07-15; 76.8: 2017-2023.
Apramycin resistance in epidemic carbapenem-resistant Klebsiella pneumoniae ST258 strains
Hao M, Schuyler J, Zhang H, Shashkina E, Du H, Fouts DE, Satlin M, Kreiswirth BN, Chen L
PMID: 33942093
Database : the journal of biological databases and curation. 2021-07-09; 2021.
Standardization of assay representation in the Ontology for Biomedical Investigations
Vita R, Zheng J, Jackson R, Dooley D, Overton JA, Miller MA, Berrios DC, Scheuermann RH, He Y, McGinty HK, Brochhausen M, Lin AY, Jain SB, Chibucos MC, Judkins J, Giglio MG, Feng IY, Burns G, Brush MH, Peters B, Stoeckert CJ
PMID: 34244718
Viruses. 2021-07-08; 13.7:
Evaluation of ELISA-Based Multiplex Peptides for the Detection of Human Serum Antibodies Induced by Zika Virus Infection across Various Countries
Martinez Viedma MDP, Panossian S, Gifford K, García K, Figueroa I, Parham L, de Moraes L, Nunes Gomes L, García-Salum T, Perret C, Weiskopf D, Tan GS, Augusto Silva A, Boaventura V, Ruiz-Palacios GM, Sette A, De Silva AD, Medina RA, Lorenzana I, Akrami KM, Khouri R, Olson D, Pickett BE
PMID: 34372525
Frontiers in medicine. 2021-06-23; 8.667462.
Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment
Yu Y, Singh H, Tsitrin T, Bekele S, Lin YH, Sikorski P, Moncera KJ, Torralba MG, Morrow L, Wolcott R, Nelson KE, Pieper R
PMID: 34249966
BMC immunology. 2021-06-16; 22.1: 37.
Transcriptomics of type 2 diabetic and healthy human neutrophils
Kleinstein SE, McCorrison J, Ahmed A, Hasturk H, Van Dyke TE, Freire M
PMID: 34134627
Cell reports. 2021-06-15; 35.11: 109267.
Streptococcus pneumoniae binds to host GAPDH on dying lung epithelial cells worsening secondary infection following influenza
Park SS, Gonzalez-Juarbe N, Riegler AN, Im H, Hale Y, Platt MP, Croney C, Briles DE, Orihuela CJ
PMID: 34133917
Microbiology resource announcements. 2021-06-10; 10.23: e0051721.
Complete Genome Sequence of Strain JB001, a Member of Saccharibacteria Clade G6 ("Candidatus Nanogingivalaceae")
Baker JL
PMID: 34110243

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