Publications

Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1724-8.
Omics Pipe: a community-based framework for reproducible multi-omics data analysis
Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI
PMID: 25637560
Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1833-5.
SFA-SPA: a suffix array based short peptide assembler for metagenomic data
Yang Y, Zhong C, Yooseph S
PMID: 25637561
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2015-06-01; 32.191-8.
SISPA-Seq for rapid whole genome surveys of bacterial isolates
Wright MS, Stockwell TB, Beck E, Busam DA, Bajaksouzian S, Jacobs MR, Bonomo RA, Adams MD
PMID: 25796360
Genome biology. 2015-05-20; 16.102.
An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum
Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L
PMID: 25990474
Retrovirology. 2015-05-16; 12.41.
Identification of potential HIV restriction factors by combining evolutionary genomic signatures with functional analyses
McLaren PJ, Gawanbacht A, Pyndiah N, Krapp C, Hotter D, Kluge SF, Götz N, Heilmann J, Mack K, Sauter D, Thompson D, Perreaud J, Rausell A, Munoz M, Ciuffi A, Kirchhoff F, Telenti A
PMID: 25980612
Genome announcements. 2015-05-07; 3.3:
Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601
Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, Liu Y, Kim S, Kehoe DM, Weinstock GM
PMID: 25953173
Retrovirology. 2015-05-07; 12.37.
HIV-1 immune activation induces Siglec-1 expression and enhances viral trans-infection in blood and tissue myeloid cells
Pino M, Erkizia I, Benet S, Erikson E, Fernández-Figueras MT, Guerrero D, Dalmau J, Ouchi D, Rausell A, Ciuffi A, Keppler OT, Telenti A, Kräusslich HG, Martinez-Picado J, Izquierdo-Useros N
PMID: 25947229
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 2015-05-07; 20.18:
Haemagglutinin mutations and glycosylation changes shaped the 2012/13 influenza A(H3N2) epidemic, Houston, Texas
Stucker KM, Schobel SA, Olsen RJ, Hodges HL, Lin X, Halpin RA, Fedorova N, Stockwell TB, Tovchigrechko A, Das SR, Wentworth DE, Musser JM
PMID: 25990233
Cell reports. 2015-05-05; 11.5: 737-47.
Discovery and characterization of an endogenous CXCR4 antagonist
Zirafi O, Kim KA, Ständker L, Mohr KB, Sauter D, Heigele A, Kluge SF, Wiercinska E, Chudziak D, Richter R, Moepps B, Gierschik P, Vas V, Geiger H, Lamla M, Weil T, Burster T, Zgraja A, Daubeuf F, Frossard N, Hachet-Haas M, Heunisch F, Reichetzeder C, Galzi JL, Pérez-Castells J, Canales-Mayordomo A, Jiménez-Barbero J, Giménez-Gallego G, Schneider M, Shorter J, Telenti A, Hocher B, Forssmann WG, Bonig H, Kirchhoff F, Münch J
PMID: 25921529
Environmental science & technology. 2015-05-05; 49.9: 5779-87.
Bacteria-mediated effects of antibiotics on Daphnia nutrition
Gorokhova E, Rivetti C, Furuhagen S, Edlund A, Ek K, Breitholtz M
PMID: 25850437

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