Publications

Current HIV/AIDS reports. 2015-03-01; 12.1: 97-106.
Bioinformatics and HIV latency
Ciuffi A, Mohammadi P, Golumbeanu M, di Iulio J, Telenti A
PMID: 25586146
Genome research. 2015-03-01; 25.3: 435-44.
Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling
Suzuki Y, Assad-Garcia N, Kostylev M, Noskov VN, Wise KS, Karas BJ, Stam J, Montague MG, Hanly TJ, Enriquez NJ, Ramon A, Goldgof GM, Richter RA, Vashee S, Chuang RY, Winzeler EA, Hutchison CA, Gibson DG, Smith HO, Glass JI, Venter JC
PMID: 25654978
Current opinion in HIV and AIDS. 2015-03-01; 10.2: 77-8.
Genomics of HIV infection
Telenti A
PMID: 25612323
Current opinion in HIV and AIDS. 2015-03-01; 10.2: 79-83.
Evolutionary genomics and HIV restriction factors
Pyndiah N, Telenti A, Rausell A
PMID: 25594315
PLoS computational biology. 2015-03-01; 11.3: e1004088.
Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms
Memišević V, Zavaljevski N, Rajagopala SV, Kwon K, Pieper R, DeShazer D, Reifman J, Wallqvist A
PMID: 25738731
Genome announcements. 2015-02-12; 3.1:
Genome Sequence of the AIDS-Associated Pathogen Penicillium marneffei (ATCC18224) and Its Near Taxonomic Relative Talaromyces stipitatus (ATCC10500)
Nierman WC, Fedorova-Abrams ND, Andrianopoulos A
PMID: 25676766
Biosensors. 2015-02-05; 5.1: 51-68.
Escherichia coli O-Antigen Gene Clusters of Serogroups O62, O68, O131, O140, O142, and O163: DNA Sequences and Similarity between O62 and O68, and PCR-Based Serogrouping
Liu Y, Yan X, DebRoy C, Fratamico PM, Needleman DS, Li RW, Wang W, Losada L, Brinkac L, Radune D, Toro M, Hegde N, Meng J
PMID: 25664526
Scientific reports. 2015-02-03; 5.8131.
Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract
Shankar J, Solis NV, Mounaud S, Szpakowski S, Liu H, Losada L, Nierman WC, Filler SG
PMID: 25644850
Current biology : CB. 2015-02-02; 25.3: 364-71.
A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake
Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C
PMID: 25557662
BMC bioinformatics. 2015-02-01; 16.31.
A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses
Shankar J, Szpakowski S, Solis NV, Mounaud S, Liu H, Losada L, Nierman WC, Filler SG
PMID: 25638274

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