Publications

Scientific reports. 2016-02-08; 6.20606.
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF
PMID: 26853110
Nature genetics. 2016-02-01; 48.2: 195-200.
Quantifying influenza virus diversity and transmission in humans
Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, Peiris JS, Cowling BJ, Ghedin E
PMID: 26727660
The ISME journal. 2016-02-01; 10.2: 514-26.
Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp
Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR
PMID: 26315972
The Journal of infectious diseases. 2016-01-15; 213.2: 173-82.
Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine
Nelson MI, Wentworth DE, Das SR, Sreevatsan S, Killian ML, Nolting JM, Slemons RD, Bowman AS
PMID: 26243317
ACS synthetic biology. 2016-01-15; 5.1: 104-9.
In-Yeast Engineering of a Bacterial Genome Using CRISPR/Cas9
Tsarmpopoulos I, Gourgues G, Blanchard A, Vashee S, Jores J, Lartigue C, Sirand-Pugnet P
PMID: 26592087
Nature communications. 2016-01-07; 7.10147.
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD
PMID: 26738725
Applied and environmental microbiology. 2016-01-04; 82.5: 1613-24.
Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies
Hogle SL, Thrash JC, Dupont CL, Barbeau KA
PMID: 26729720
PloS one. 2016-01-01; 11.3: e0166336.
Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus)
Patel MC, Wang W, Pletneva LM, Rajagopala SV, Tan Y, Hartert TV, Boukhvalova MS, Vogel SN, Das SR, Blanco JC
PMID: 27814404
Molecular microbiology. 2016-01-01; 99.1: 55-70.
Galactofuranose in Mycoplasma mycoides is important for membrane integrity and conceals adhesins but does not contribute to serum resistance
Schieck E, Lartigue C, Frey J, Vozza N, Hegermann J, Miller RA, Valguarnera E, Muriuki C, Meens J, Nene V, Naessens J, Weber J, Lowary TL, Vashee S, Feldman MF, Jores J
PMID: 26354009
Plasmid. 2016-01-01; 83.8-11.
Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids
Losada L, DebRoy C, Radune D, Kim M, Sanka R, Brinkac L, Kariyawasam S, Shelton D, Fratamico PM, Kapur V, Feng PC
PMID: 26746359

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