Publications

Nature communications. 2016-11-11; 7.13390.
The pangenome of an agronomically important crop plant Brassica oleracea
Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D
PMID: 27834372
Molecular microbiology. 2016-11-01; 102.4: 628-641.
A role for copper in protozoan grazing - two billion years selecting for bacterial copper resistance
Hao X, Lüthje F, Rønn R, German NA, Li X, Huang F, Kisaka J, Huffman D, Alwathnani HA, Zhu YG, Rensing C
PMID: 27528008
mSystems. 2016-11-01; 1.6:
Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen
Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein PC
PMID: 28028548
Microbial ecology. 2016-11-01; 72.4: 943-954.
Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla)
Vlčková K, Gomez A, Petrželková KJ, Whittier CA, Todd AF, Yeoman CJ, Nelson KE, Wilson BA, Stumpf RM, Modrý D, White BA, Leigh SR
PMID: 26984253
Hepatology (Baltimore, Md.). 2016-11-01; 64.5: 1547-1558.
Shared genetic effects between hepatic steatosis and fibrosis: A prospective twin study
Cui J, Chen CH, Lo MT, Schork N, Bettencourt R, Gonzalez MP, Bhatt A, Hooker J, Shaffer K, Nelson KE, Long MT, Brenner DA, Sirlin CB, Loomba R, For The Genetics Of Nafld In Twins Consortium
PMID: 27315352
Proceedings of the National Academy of Sciences of the United States of America. 2016-10-18; 113.42: 11901-11906.
Deep sequencing of 10,000 human genomes
Telenti A, Pierce LC, Biggs WH, di Iulio J, Wong EH, Fabani MM, Kirkness EF, Moustafa A, Shah N, Xie C, Brewerton SC, Bulsara N, Garner C, Metzker G, Sandoval E, Perkins BA, Och FJ, Turpaz Y, Venter JC
PMID: 27702888
BMC medical genomics. 2016-10-13; 9.1: 63.
Protecting genomic data analytics in the cloud: state of the art and opportunities
Tang H, Jiang X, Wang X, Wang S, Sofia H, Fox D, Lauter K, Malin B, Telenti A, Xiong L, Ohno-Machado L
PMID: 27733153
mBio. 2016-10-11; 7.5:
Genetic Dissection of the Type VI Secretion System in Acinetobacter and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis
Weber BS, Hennon SW, Wright MS, Scott NE, de Berardinis V, Foster LJ, Ayala JA, Adams MD, Feldman MF
PMID: 27729508
BMC bioinformatics. 2016-10-06; 17.Suppl 13: 333.
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements
Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG
PMID: 27766961
Journal of virology. 2016-10-01; 90.19: 8454-63.
Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus
Zhou B, Meliopoulos VA, Wang W, Lin X, Stucker KM, Halpin RA, Stockwell TB, Schultz-Cherry S, Wentworth DE
PMID: 27440882

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