Publications

Nature biotechnology. 2017-08-08; 35.8: 716-718.
Rules of the road for insect gene drive research and testing
Adelman Z, Akbari O, Bauer J, Bier E, Bloss C, Carter SR, Callender C, Denis AC, Cowhey P, Dass B, Delborne J, Devereaux M, Ellsworth P, Friedman RM, Gantz V, Gibson C, Hay BA, Hoddle M, James AA, James S, Jorgenson L, Kalichman M, Marshall J, McGinnis W, Newman J, Pearson A, Quemada H, Rudenko L, Shelton A, Vinetz JM, Weisman J, Wong B, Wozniak C
PMID: 28787415
BMC genomics. 2017-08-04; 18.1: 578.
Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula
Moll KM, Zhou P, Ramaraj T, Fajardo D, Devitt NP, Sadowsky MJ, Stupar RM, Tiffin P, Miller JR, Young ND, Silverstein KAT, Mudge J
PMID: 28778149
The Journal of antimicrobial chemotherapy. 2017-08-01; 72.8: 2249-2258.
Genomic epidemiology of global VIM-producing Enterobacteriaceae
Matsumura Y, Peirano G, Devinney R, Bradford PA, Motyl MR, Adams MD, Chen L, Kreiswirth B, Pitout JDD
PMID: 28520983
The Plant cell. 2017-08-01; 29.8: 1806-1821.
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Waese J, Fan J, Pasha A, Yu H, Fucile G, Shi R, Cumming M, Kelley LA, Sternberg MJ, Krishnakumar V, Ferlanti E, Miller J, Town C, Stuerzlinger W, Provart NJ
PMID: 28808136
PLoS neglected tropical diseases. 2017-08-01; 11.8: e0005693.
Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas
Forrester NL, Wertheim JO, Dugan VG, Auguste AJ, Lin D, Adams AP, Chen R, Gorchakov R, Leal G, Estrada-Franco JG, Pandya J, Halpin RA, Hari K, Jain R, Stockwell TB, Das SR, Wentworth DE, Smith MD, Kosakovsky Pond SL, Weaver SC
PMID: 28771475
Proceedings of the National Academy of Sciences of the United States of America. 2017-08-01; 114.31: 8342-8347.
Severe viral respiratory infections in children with IFIH1 loss-of-function mutations
Asgari S, Schlapbach LJ, Anchisi S, Hammer C, Bartha I, Junier T, Mottet-Osman G, Posfay-Barbe KM, Longchamp D, Stocker M, Cordey S, Kaiser L, Riedel T, Kenna T, Long D, Schibler A, Telenti A, Tapparel C, McLaren PJ, Garcin D, Fellay J
PMID: 28716935
The Plant cell. 2017-08-01; 29.8: 2047-2070.
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom
McCarthy JK, McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth RA, Roth R, Lichtle C, Lichtle C, Goodenough U, Bowler C, Bowler CP, Dupont CL, Dupont CL, Allen AE
PMID: 28765511
Genome announcements. 2017-07-27; 5.30:
Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock
Shrivastava S, Puri V, Fedorova N, Amedeo P, Stockwell TB, Shabman RS, Rashid S, Pickett BE
PMID: 28751385
Proceedings of the National Academy of Sciences of the United States of America. 2017-07-25; 114.30: 8059-8064.
Fast and accurate HLA typing from short-read next-generation sequence data with xHLA
Xie C, Yeo ZX, Wong M, Piper J, Long T, Kirkness EF, Biggs WH, Bloom K, Spellman S, Vierra-Green C, Brady C, Scheuermann RH, Telenti A, Howard S, Brewerton S, Turpaz Y, Venter JC
PMID: 28674023
BMC genomics. 2017-07-19; 18.1: 541.
Hybrid assembly with long and short reads improves discovery of gene family expansions
Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT
PMID: 28724409

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