Publications

Methods in molecular biology (Clifton, N.J.). 2021-01-01; 2327.161-189.
Identification of Oral Bacterial Biosynthetic Gene Clusters Associated with Caries
Baker JL, Edlund A
PMID: 34410645
Methods in molecular biology (Clifton, N.J.). 2021-01-01; 2261.25-34.
Lab-on-a-Filter Techniques for Economical, Effective, and Flexible Proteome Analysis
Lin YH, Eguez RV, Vashee I, Yu Y
PMID: 33420982
Environmental research. 2021-01-01; 192.110277.
Genomic insights into waste valorized extracellular polymeric substances (EPS) produced by Bacillus sp. ISTL8
Gupta J, Rathour R, Dupont CL, Kaul D, Thakur IS
PMID: 33069701
mSystems. 2020-12-22; 5.6:
Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions
Sharma AK, Petrzelkova K, Pafco B, Jost Robinson CA, Fuh T, Wilson BA, Stumpf RM, Torralba MG, Blekhman R, White B, Nelson KE, Leigh SR, Gomez A
PMID: 33361321
Science (New York, N.Y.). 2020-12-18; 370.6523: 1417-1419.
Core commitments for field trials of gene drive organisms
Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašić G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS
PMID: 33335055
Hepatology (Baltimore, Md.). 2020-12-01; 72.6: 2182-2196.
Intestinal Virome in Patients With Alcoholic Hepatitis
Jiang L, Lang S, Duan Y, Zhang X, Gao B, Chopyk J, Schwanemann LK, Ventura-Cots M, Bataller R, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Kisseleva T, Brenner DA, Tu XM, Stärkel P, Pride D, Fouts DE, Schnabl B
PMID: 32654263
Microbial genomics. 2020-12-01; 6.12:
Genetic diversity of clinical and environmental Mucorales isolates obtained from an investigation of mucormycosis cases among solid organ transplant recipients
Nguyen MH, Kaul D, Muto C, Cheng SJ, Richter RA, Bruno VM, Liu G, Beyhan S, Sundermann AJ, Mounaud S, Pasculle AW, Nierman WC, Driscoll E, Cumbie R, Clancy CJ, Dupont CL
PMID: 33245689
The ISME journal. 2020-12-01; 14.12: 3068-3078.
Bidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism
Stuart RK, Pederson ERA, Weyman PD, Weber PK, Rassmussen U, Dupont CL
PMID: 32814866
Nature neuroscience. 2020-12-01; 23.12: 1456-1468.
A community-based transcriptomics classification and nomenclature of neocortical cell types
Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Armañanzas R, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fiáth R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, Güntürkün O, Hagihara K, Hall VJ, Helmstaedter M, Herculano S, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Kühnemund M, Larrañaga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Moradi Chameh H, Chameh HM, Nath A, Mohapatra AN, Munguba H, Nedergaard M, Němec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann R, Scheuermann RH, Serrano-Saiz E, Steiger JF, Staiger JF, Somogyi P, Tamás G, Tolias AS, Tosches MA, García MT, Vieira HM, Wozny C, Wuttke TV, Yong L, Liu Y, Yuan J, Zeng H, Lein E
PMID: 32839617
Nature biotechnology. 2020-12-01; 38.12: 1384-1386.
Guidelines for reporting single-cell RNA-seq experiments
Füllgrabe A, George N, Green M, Nejad P, Aronow B, Fexova SK, Fischer C, Freeberg MA, Huerta L, Morrison N, Scheuermann RH, Taylor D, Vasilevsky N, Clarke L, Gehlenborg N, Kent J, Marioni J, Teichmann S, Brazma A, Papatheodorou I
PMID: 33188371

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