Publications

Nature. 2002-10-03; 419.6906: 512-9.
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL, Peterson JD, Pop M, Kosack DS, Shumway MF, Bidwell SL, Shallom SJ, Van Aken SE, Riedmuller SB, Feldblyum TV, Cho JK, Quackenbush J, Sedegah M, Shoaibi A, Cummings LM, Florens L, Yates JR, Raine JD, Sinden RE, Harris MA, Cunningham DA, Preiser PR, Bergman LW, Vaidya AB, van Lin LH, Janse CJ, Waters AP, Smith HO, White OR, Salzberg SL, Venter JC, Fraser CM, Hoffman SL, Gardner MJ, Carucci DJ
PMID: 12368865
Nature. 2002-10-03; 419.6906: 498-511.
Genome sequence of the human malaria parasite Plasmodium falciparum
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B
PMID: 12368864
Nature. 2002-10-03; 419.6906: 531-4.
Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B, Jarrahi B, Brenner M, Parvizi B, Tallon L, Moazzez A, Granger D, Fujii C, Hansen C, Pederson J, Feldblyum T, Peterson J, Suh B, Angiuoli S, Pertea M, Allen J, Selengut J, White O, Cummings LM, Smith HO, Adams MD, Venter JC, Carucci DJ, Hoffman SL, Fraser CM
PMID: 12368868
BioTechniques. 2002-10-01; 33.4: 924-30.
Use of RNA and genomic DNA references for inferred comparisons in DNA microarray analyses
Kim H, Zhao B, Snesrud EC, Haas BJ, Town CD, Quackenbush J
PMID: 12398202
Proceedings of the National Academy of Sciences of the United States of America. 2002-10-01; 99.20: 13148-53.
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts
Paulsen IT, Seshadri R, Nelson KE, Eisen JA, Heidelberg JF, Read TD, Dodson RJ, Umayam L, Brinkac LM, Beanan MJ, Daugherty SC, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Nelson WC, Ayodeji B, Kraul M, Shetty J, Malek J, Van Aken SE, Riedmuller S, Tettelin H, Gill SR, White O, Salzberg SL, Hoover DL, Lindler LE, Halling SM, Boyle SM, Fraser CM
PMID: 12271122
Plant physiology. 2002-10-01; 130.2: 519-37.
Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula
Fedorova M, van de Mortel J, Matsumoto PA, Cho J, Town CD, VandenBosch KA, Gantt JS, Vance CP
PMID: 12376622
Journal of bacteriology. 2002-10-01; 184.19: 5479-90.
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, Salzberg SL, Delcher A, Utterback T, Weidman J, Khouri H, Gill J, Mikula A, Bishai W, Jacobs Jr WR, Venter JC, Fraser CM
PMID: 12218036
Carcinogenesis. 2002-10-01; 23.10: 1561-8.
cDNA microarray profiling of rat mammary gland carcinomas induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine and 7,12-dimethylbenz[a]anthracene
Shan L, He M, Yu M, Qiu C, Lee NH, Liu ET, Snyderwine EG
PMID: 12376462
Proceedings of the National Academy of Sciences of the United States of America. 2002-09-17; 99.19: 12391-6.
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae
Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulsen IT, Nelson KE, Margarit I, Read TD, Madoff LC, Wolf AM, Beanan MJ, Brinkac LM, Daugherty SC, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Lewis MR, Radune D, Fedorova NB, Scanlan D, Khouri H, Mulligan S, Carty HA, Cline RT, Van Aken SE, Gill J, Scarselli M, Mora M, Iacobini ET, Brettoni C, Galli G, Mariani M, Vegni F, Maione D, Rinaudo D, Rappuoli R, Telford JL, Kasper DL, Grandi G, Fraser CM
PMID: 12200547
Gene. 2002-09-04; 297.1-2: 229-39.
LINEs and SINE-like elements of the protist Entamoeba histolytica
Van Dellen K, Field J, Wang Z, Loftus B, Samuelson J
PMID: 12384304

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