Publications

Nucleic acids research. 2003-01-01; 31.1: 229-33.
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists
Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR
PMID: 12519988
Genome biology. 2003-01-01; 4.1: R80.
Comparison of the canine and human olfactory receptor gene repertoires
Quignon P, Kirkness E, Cadieu E, Touleimat N, Guyon R, Renier C, Hitte C, André C, Fraser C, Galibert F
PMID: 14659017
Nucleic acids research. 2003-01-01; 31.1: 234-6.
ToxoDB: accessing the Toxoplasma gondii genome
Kissinger JC, Gajria B, Li L, Paulsen IT, Roos DS
PMID: 12519989
Genome biology. 2003-01-01; 4.1: 314.
Microbial genome jambalaya
Read TD
PMID: 12702204
Cytogenetic and genome research. 2003-01-01; 102.1-4: 347-54.
Sequence analysis of a rainbow trout cDNA library and creation of a gene index
Rexroad CE, Lee Y, Keele JW, Karamycheva S, Brown G, Koop B, Gahr SA, Palti Y, Quackenbush J
PMID: 14970727
Veterinary microbiology. 2002-12-20; 90.1-4: 249-61.
Sugar metabolism by Brucellae
Essenberg RC, Seshadri R, Nelson K, Paulsen I
PMID: 12414147
Nature. 2002-12-05; 420.6915: 563-73.
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group Phase I & II Team
PMID: 12466851
Environmental microbiology. 2002-12-01; 4.12: 799-808.
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, Deboy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM
PMID: 12534463
Environmental microbiology. 2002-12-01; 4.12: 819-23.
The genome structure of Pseudomonas putida: high-resolution mapping and microarray analysis
Stjepandić D, Weinel C, Hilbert H, Koo HL, Diehl F, Nelson KE, Tümmler B, Hoheisel JD
PMID: 12534465
Nature genetics. 2002-12-01; 32 Suppl.496-501.
Microarray data normalization and transformation
Quackenbush J
PMID: 12454644

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