Publications

Stroke. 2024-10-01; 55.10: e266-e268.
Unveiling Molecular Diversity in Cerebral Thrombi via Spatial Transcriptomics
Walker M, Federico E, Espinoza JL, Dupont CL
PMID: 39206540
Proceedings of the National Academy of Sciences of the United States of America. 2024-10-01; 121.40: e2319177121.
Molecular forecasting of domoic acid during a pervasive toxic diatom bloom
Brunson JK, Thukral M, Ryan JP, Anderson CR, Kolody BC, James CC, Chavez FP, Leaw CP, Rabines AJ, Venepally P, Fussy Z, Zheng H, Kudela RM, Smith GJ, Moore BS, Allen AE
PMID: 39298472
Scientific reports. 2024-09-28; 14.1: 22408.
Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome
James CC, Allen AE, Lampe RH, Rabines A, Barton AD
PMID: 39333653
PLoS pathogens. 2024-08-23; 20.8: e1012495.
Fitness factor genes conserved within the multi-species core genome of Gram-negative Enterobacterales species contribute to bacteremia pathogenesis
Mobley HLT, Anderson MT, Moricz BS, Severin GB, Holmes CL, Ottosen EN, Eichler T, Gupta S, Paudel S, Sinha R, Mason S, Himpsl SD, Brown AN, Gaca M, Kiser CM, Clarke TH, Fouts DE, DiRita VJ, Bachman MA
PMID: 39178317
Applied and environmental microbiology. 2024-08-21; 90.8: e0108324.
Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant
Peña-Montenegro TD, Kleindienst S, Allen AE, Eren AM, McCrow JP, Arnold J, Joye SB
PMID: 39041797
mBio. 2024-08-14; 15.8: e0003824.
Marine bacteria Alteromonas spp. require UDP-glucose-4-epimerase for aggregation and production of sticky exopolymer
Robertson JM, Garza EA, Stubbusch AKM, Dupont CL, Hwa T, Held NA
PMID: 38958440
Nucleic acids research. 2024-08-12; 52.14: e63.
Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing
Espinoza JL, Phillips A, Prentice MB, Tan GS, Kamath PL, Lloyd KG, Dupont CL
PMID: 38909293
Frontiers in public health. 2024-08-09; 12.1399731.
Whole-genome sequencing-based genetic diversity, transmission dynamics, and drug-resistant mutations in Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia
Chekesa B, Singh H, Gonzalez-Juarbe N, Vashee S, Wiscovitch-Russo R, Dupont CL, Girma M, Kerro O, Gumi B, Ameni G
PMID: 39185123
PloS one. 2024-07-29; 19.7: e0307968.
Serum susceptibility of Escherichia coli and its association with patient clinical outcomes
Poteete O, Cox P, Ruffin F, Sutton G, Brinkac L, Clarke TH, Fouts DE, Fowler VG, Thaden JT
PMID: 39074102
PloS one. 2024-07-25; 19.7: e0304060.
Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia
Chekesa B, Singh H, Gonzalez-Juarbe N, Vashee S, Wiscovitch-Russo R, Dupont CL, Girma M, Kerro O, Gumi B, Ameni G
PMID: 39052555

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