Publications

BMC microbiology. 2012-07-27; 12.151.
A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence
Gilchrist CA, Ali IK, Kabir M, Alam F, Scherbakova S, Ferlanti E, Weedall GD, Hall N, Haque R, Petri WA, Caler E
PMID: 22839995
ACS synthetic biology. 2012-07-20; 1.7: 267-73.
Assembly of large, high G+C bacterial DNA fragments in yeast
Noskov VN, Karas BJ, Young L, Chuang RY, Gibson DG, Lin YC, Stam J, Yonemoto IT, Suzuki Y, Andrews-Pfannkoch C, Glass JI, Smith HO, Hutchison CA, Venter JC, Weyman PD
PMID: 23651249
Cell. 2012-07-20; 150.2: 389-401.
A whole-cell computational model predicts phenotype from genotype
Karr JR, Sanghvi JC, Macklin DN, Gutschow MV, Jacobs JM, Bolival B, Assad-Garcia N, Glass JI, Covert MW
PMID: 22817898
Journal of molecular biology. 2012-07-20; 420.4-5: 366-83.
Structural and functional characterization of microcin C resistance peptidase MccF from Bacillus anthracis
Nocek B, Tikhonov A, Babnigg G, Gu M, Zhou M, Makarova KS, Vondenhoff G, Van Aerschot A, Kwon K, Anderson WF, Severinov K, Joachimiak A
PMID: 22516613
Molecular systems biology. 2012-07-17; 8.595.
Global biogeography of SAR11 marine bacteria
Brown MV, Lauro FM, DeMaere MZ, Muir L, Wilkins D, Thomas T, Riddle MJ, Fuhrman JA, Andrews-Pfannkoch C, Hoffman JM, McQuaid JB, Allen A, Rintoul SR, Cavicchioli R
PMID: 22806143
The ISME journal. 2012-07-01; 6.7: 1403-14.
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic
Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE
PMID: 22278668
Nature biotechnology. 2012-07-01; 30.7: 693-700.
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy
PMID: 22750884
Bacteriophage. 2012-07-01; 2.3: 190-199.
Next generation sequencing technologies and the changing landscape of phage genomics
Klumpp J, Fouts DE, Sozhamannan S
PMID: 23275870
Journal of the American Veterinary Medical Association. 2012-07-01; 241.1: 66-72.
Effects of canine parvovirus strain variations on diagnostic test results and clinical management of enteritis in dogs
Markovich JE, Stucker KM, Carr AH, Harbison CE, Scarlett JM, Parrish CR
PMID: 22720989
PLoS genetics. 2012-07-01; 8.7: e1002784.
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions
Loper JE, Hassan KA, Mavrodi DV, Davis EW, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT
PMID: 22792073

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