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Phytoplankton Genetically Sequenced at Sea for the First Time
Viking’s Initiative with UC San Diego’s Scripps Institution of Oceanography and J. Craig Venter Institute Aims to Provide Better Understanding of the “World’s Lungs”
Tae Seok Moon, Ph.D. and Nan Zhu, Ph.D. join J. Craig Venter Institute faculty
JCVI continues to actively recruit faculty to expand core research areas, including human health and synthetic biology
Groundbreaking study reveals oral microbiome’s role in immune response and COVID-19 severity
Newly developed AI model shows that saliva is a better predictor of COVID-19 severity than existing blood tests
Scientists develop method to efficiently construct single-copy human artificial chromosomes (HACs)
This new tool will allow scientists to work in mammalian systems in ways only previously available in bacteria and yeast
HACs have wide potential research applications to synthetic biologists and may eventually aid in delivering DNA in clinical applications
With combined funding of 3,000,000 euros the BBVA Foundation’s Fundamentos Program supports five innovative exploratory research projects on core questions in basic science
JCVI work supported through The Physical Basis of Cell Division in Minimal and Synthetic cells (MINCELL) Fundamentos Program
Opentrons Announces New Robotics Education Initiative Demonstrating Commitment to Laboratory Automation for Students
12th Build-a-Cell Workshop hosted at J. Craig Venter Institute in La Jolla
The workshop will take place March 29, 2024 with registration closing March 19
New LongCOVID research launched by PolyBio’s global consortium of scientists
Funding will deepen research on the persistence of the SARS-CoV-2 virus in LongCOVID patients and launch new clinical trials
J. Craig Venter Institute contracted by the Centers for Disease Control and Prevention to rapidly construct synthetic influenza genes
Genes will be used to help develop seasonal and pandemic vaccines, improving response time and vaccine efficacy
Coastal upwelling regions threatened by increased ocean acidification
Increased acidification shown to limit iron availability, a critical element for the survival of phytoplankton, the foundation of the oceanic food web
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Related
Polynya opens in the Ross Sea
A helicopter pilot recently sent us an image of the area we are planning to sample, and the stable sea ice we intended to use as a platform for drilling and sampling is now a giant stretch of open seawater! A large opening like this is a polynya, a term borrowed from the Russian...
Christchurch, New Zealand
Greetings from Christchurch, New Zealand, the anteroom to Antarctica. My colleagues and I have been here for several days now, running last minute errands, getting equipped with cold weather gear, and waiting for a flight south to McMurdo Station. The flight here was remarkable only in it's...
Why Antarctica, and why now?
So why are you going to Antarctica, and why are you going now? A very logical question... basically we are traveling to Antarctica to study microscopic marine plants known as phytoplankton. These organisms range in size from bacteria to diatoms to colonial algae, but all phytoplankton have two...
Trip preparations (inaugural posting!)
Well, we have less than a week left, and we are finalizing and shipping the chemicals and equipment we will need for sampling below the sea ice in the Ross Sea. We have already shipped out several hundred pounds of gear, and more await us in storage down at McMurdo Station in Antarctica....
Going west!
After saying good bye to our new friends in Rostock/Warnemünde I was looking forward to coming back to Swedish waters, this time a bit saltier, on the west coast. There are two marine field stations on the Swedish west coast belonging to The Sven Lovén Center for Marine Sciences. Our first...
In the bloom...almost
Cyanobacterial blooms during the summer are reoccurring phenomena in the Baltic Sea. This summer we have already encountered the two main species responsible the blooms, Aphanizomenon sp. and the toxin producing Nodularia spumigena (see previous posts), but so far not in the abundance that...
In the Deep
After the brief stop in my hometown we continue our journey southward in the Baltic proper. Our first sampling site was the Landsort deep, the very deepest part of the Baltic Sea (459 meters!) and a long-term monitoring and sampling site for various Swedish and international scientists...
The Midnight Sun and Fermented Fish
We returned from Abisko on Thursday July 9th around 10 p.m. The next morning was very busy for the crew as we had to put the science gear back together, prepare the boat, and do local newspaper and radio interviews. Read the interview: paper Like the transect north, our...
ROAD TRIP! Watch Out Arctic Circle...the Sorcerer II Sampling Team is Coming Your Way!
After we arrived in Luleå, Jeremy, Karolina and I started packing for our road sampling trip to Lake Torneträsk, a freshwater lake located in the Arctic Circle. Dr. Erling Norrby had contacted Dr. Christer Jonasson, the deputy director of the Abisko Scientific Research Station, to help...
Sunset at Norrbyskär
It was another beautiful morning in the Gulf of Bothnia as we left Härnösand. We stopped at another sampling site before meeting with a boat from Umeå Marine Research Station (UMF). We were greeted by UMF scientist Dr. Johan Wikner and a television crew. We docked at Norrbyskär, a...
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Scientist renowned for study of adolescent brains named president of J. Craig Venter Institute
Anders Dale says he will move roughly $10 million in NIH funding from UCSD to JCVI.
Mirror Bacteria Research Poses Significant Risks, Dozens of Scientists Warn
Synthetic biologists make artificial cells, but one particular kind isn’t worth the risk.
Can CRISPR help stop African Swine Fever?
Gene editing could create a successful vaccine to protect against the viral disease that has killed close to 2 million pigs globally since 2021.
Getting Under the Skin
Amid an insulin crisis, one project aims to engineer microscopic insulin pumps out of a skin bacterium.
Planet Microbe
There are more organisms in the sea, a vital producer of oxygen on Earth, than planets and stars in the universe.
The Next Climate Change Calamity?: We’re Ruining the Microbiome, According to Human-Genome-Pioneer Craig Venter
In a new book (coauthored with Venter), a Vanity Fair contributor presents the oceanic evidence that human activity is altering the fabric of life on a microscopic scale.
Lessons from the Minimal Cell
“Despite reducing the sequence space of possible trajectories, we conclude that streamlining does not constrain fitness evolution and diversification of populations over time. Genome minimization may even create opportunities for evolutionary exploitation of essential genes, which are commonly observed to evolve more slowly.”
Even Synthetic Life Forms With a Tiny Genome Can Evolve
By watching “minimal” cells regain the fitness they lost, researchers are testing whether a genome can be too simple to evolve.
Privacy concerns sparked by human DNA accidentally collected in studies of other species
Two research teams warn that human genomic “bycatch” can reveal private information
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Logos
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Images
Following are images of our facilities, research areas, and staff for use in news media, education, and noncommercial applications, given attribution noted with each image. If you require something that is not provided or would like to use the image in a commercial application please reach out to the JCVI Marketing and Communications team at info@jcvi.org.
Human Genome

The Diploid Genome Sequence of J. Craig Venter
gff2ps achieved another genome landmark to visualize the annotation of the first published human diploid genome, included as Poster S1 of “The Diploid Genome Sequence of J. Craig Venter” (Levy et al., PLoS Biology, 5(10):e254, 2007). Courtesy J.F. Abril / Computational Genomics Lab, Universitat de Barcelona (compgen.bio.ub.edu/Genome_Posters).

Annotation of the Celera Human Genome Assembly
We have drawn the map of the Human Genome with gff2ps. 22 autosomic, X and Y chromosomes were displayed in a big poster appearing as Figure 1 of “The Sequence of the Human Genome” (Venter et al., Science, 291(5507):1304-1351, 2001). The single chromosome pictures can be accessed from here to visualize the web version of the “Annotation of the Celera Human Genome Assembly” poster. Courtesy J.F. Abril / Computational Genomics Lab, Universitat de Barcelona (compgen.bio.ub.edu/Genome_Posters).
Synthetic Cell

J. Craig Venter, Ph.D. and Hamilton O. Smith, M.D.
Credit: J. Craig Venter Institute

Hamilton O. Smith, M.D. and Clyde A. Hutchison III, Ph.D.
Credit: J. Craig Venter Institute

J. Craig Venter, Ph.D.
Credit: Brett Shipe / J. Craig Venter Institute

Clyde A. Hutchison III, Ph.D.
Credit: J. Craig Venter Institute

John Glass, Ph.D.
Credit: J. Craig Venter Institute

Dan Gibson, Ph.D.
Credit: J. Craig Venter Institute

Carole Lartigue, Ph.D.
Credit: J. Craig Venter Institute

JCVI Synthetic Biology Team
Credit: J. Craig Venter Institute

Aggregated M. mycoides JCVI-syn1.0
Negatively stained transmission electron micrographs of aggregated M. mycoides JCVI-syn1.0. Cells using 1% uranyl acetate on pure carbon substrate visualized using JEOL 1200EX transmission electron microscope at 80 keV. Electron micrographs were provided by Tom Deerinck and Mark Ellisman of the National Center for Microscopy and Imaging Research at the University of California at San Diego.

Dividing M. mycoides JCVI-syn1.0
Negatively stained transmission electron micrographs of dividing M. mycoides JCVI-syn1.0. Freshly fixed cells were stained using 1% uranyl acetate on pure carbon substrate visualized using JEOL 1200EX transmission electron microscope at 80 keV. Electron micrographs were provided by Tom Deerinck and Mark Ellisman of the National Center for Microscopy and Imaging Research at the University of California at San Diego.

Scanning Electron Micrographs of M. mycoides JCVI-syn1
Scanning electron micrographs of M. mycoides JCVI-syn1. Samples were post-fixed in osmium tetroxide, dehydrated and critical point dried with CO2 , then visualized using a Hitachi SU6600 scanning electron microscope at 2.0 keV. Electron micrographs were provided by Tom Deerinck and Mark Ellisman of the National Center for Microscopy and Imaging Research at the University of California at San Diego.

Mycoplasma mycoides JCVI-syn1.0
Credit: J. Craig Venter Institute

The Assembly of a Synthetic M. mycoides Genome in Yeast
Credit: J. Craig Venter Institute

M. mycoides JCVI-syn 1.0 and WT M. mycoides
Credit: J. Craig Venter Institute

Creating Bacteria from Prokaryotic Genomes Engineered in Yeast
Credit: J. Craig Venter Institute
See more on the first self-replicating synthetic bacterial cell.
Minimal Cell

Minimal Cell — JCVI-syn3.0
Electron micrographs of clusters of JCVI-syn3.0 cells magnified about 15,000 times. This is the world’s first minimal bacterial cell. Its synthetic genome contains only 473 genes. Surprisingly, the functions of 149 of those genes are unknown. The images were made by Tom Deerinck and Mark Ellisman of the National Center for Imaging and Microscopy Research at the University of California at San Diego.

Minimal Cell — JCVI-syn3.0
Electron micrographs of clusters of JCVI-syn3.0 cells magnified about 15,000 times. This is the world’s first minimal bacterial cell. Its synthetic genome contains only 473 genes. Surprisingly, the functions of 149 of those genes are unknown. The images were made by Tom Deerinck and Mark Ellisman of the National Center for Imaging and Microscopy Research at the University of California at San Diego.

Minimal Cell — JCVI-syn3.0
Electron micrographs of clusters of JCVI-syn3.0 cells magnified about 15,000 times. This is the world’s first minimal bacterial cell. Its synthetic genome contains only 473 genes. Surprisingly, the functions of 149 of those genes are unknown. The images were made by Tom Deerinck and Mark Ellisman of the National Center for Imaging and Microscopy Research at the University of California at San Diego.
Leadership

J. Craig Venter, Ph.D.
Credit: Brett Shipe / J. Craig Venter Institute

Sanjay Vashee, Ph.D.
Credit: J. Craig Venter Institute

John Glass, Ph.D.
Credit: J. Craig Venter Institute
Scientists in the Lab

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute

JCVI Scientists Working in Lab
Credit: J. Craig Venter Institute
JCVI La Jolla Lab (Exterior)

J. Craig Venter Institute, La Jolla (building exterior)
North facade at dusk. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
South facade from soccer field. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Northwest view. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Northeast view of main entrance. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
East facing main entrance at dusk. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
East facing main entrance. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Building main entrance. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
JCVI La Jolla north facade. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
JCVI La Jolla north facade detail. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Rock garden in courtyard dusk. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Rock garden in courtyard. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Rock garden in courtyard. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
People at courtyard tables. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
2nd floor deck. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building exterior)
Looking west at dusk. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
First floor plaza looking south. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
East main entrance closeup. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Stairs in courtyard. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Detail of southwest corner. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Sunset off 3rd floor deck. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building exterior)
From northwest at dusk. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building exterior)
Photovoltaics looking west towards ocean. Nick Merrick © Hedrich Blessing Photographers.
JCVI La Jolla Lab (Interior)

J. Craig Venter Institute, La Jolla (building interior)
Wet lab with people. Nick Merrick © Hedrich Blessing Photographers.

J. Craig Venter Institute, La Jolla (building interior)
Single cell analyzer with researcher. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
Mili-Q water purifier. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
Lab bench work. Green plugs can be seen. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
Cool room. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
Confocal microscope. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
Anaerobic glove box. © Tim Griffith.

J. Craig Venter Institute, La Jolla (building interior)
JCVI staff at DNA sequencer. © Tim Griffith.