GCID Publications

Journal of virology. 2008-12-01; 82.24: 12422-31.
Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences
Alekseev KP, Vlasova AN, Jung K, Hasoksuz M, Zhang X, Halpin R, Wang S, Ghedin E, Spiro D, Saif LJ
PMID: 18842722
Nature. 2008-10-09; 455.7214: 757-63.
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM
PMID: 18843361
Journal of bacteriology. 2008-10-01; 190.20: 6779-94.
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5
Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R
PMID: 18708504
Journal of bacteriology. 2008-10-01; 190.20: 6881-93.
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J
PMID: 18676672
PLoS pathogens. 2008-08-22; 4.8: e1000133.
Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States
Nelson MI, Edelman L, Spiro DJ, Boyne AR, Bera J, Halpin R, Sengamalay N, Ghedin E, Miller MA, Simonsen L, Viboud C, Holmes EC
PMID: 18725925
BMC microbiology. 2008-06-30; 8.110.
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA
PMID: 18590559
Proceedings of the National Academy of Sciences of the United States of America. 2008-06-24; 105.25: 8730-5.
MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi
Margos G, Gatewood AG, Aanensen DM, Hanincová K, Terekhova D, Vollmer SA, Cornet M, Piesman J, Donaghy M, Bormane A, Hurn MA, Feil EJ, Fish D, Casjens S, Wormser GP, Schwartz I, Kurtenbach K
PMID: 18574151
PLoS pathogens. 2008-05-30; 4.5: e1000076.
The evolutionary genetics and emergence of avian influenza viruses in wild birds
Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK
PMID: 18516303
Nature. 2008-05-29; 453.7195: 615-9.
The genomic and epidemiological dynamics of human influenza A virus
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC
PMID: 18418375
Journal of virology. 2008-05-01; 82.10: 4807-11.
Homologous recombination is very rare or absent in human influenza A virus
Boni MF, Zhou Y, Taubenberger JK, Holmes EC
PMID: 18353939

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