GCID Publications

PLoS pathogens. 2010-05-27; 6.5: e1000922.
The early stage of bacterial genome-reductive evolution in the host
Song H, Hwang J, Yi H, Ulrich RL, Yu Y, Nierman WC, Kim HS
PMID: 20523904
Science (New York, N.Y.). 2010-05-21; 328.5981: 994-9.
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D
PMID: 20489017
PLoS pathogens. 2010-05-06; 6.5: e1000896.
Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing
Eckerle LD, Becker MM, Halpin RA, Li K, Venter E, Lu X, Scherbakova S, Graham RL, Baric RS, Stockwell TB, Spiro DJ, Denison MR
PMID: 20463816
Virulence. 2010-05-01; 1.3: 164-73.
Characterization of a 5-azacytidine-induced developmental Aspergillus fumigatus variant
Ben-Ami R, Varga V, Lewis RE, May GS, Nierman WC, Kontoyiannis DP
PMID: 21178435
Emerging infectious diseases. 2010-05-01; 16.5: 885-7.
No resistance plasmid in Yersinia pestis, North America
Wagner DM, Runberg J, Vogler AJ, Lee J, Driebe E, Price LB, Engelthaler DM, Fricke WF, Ravel J, Keim P
PMID: 20409397
PLoS pathogens. 2010-04-01; 6.4: e1000845.
A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence
Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, Sung WK, Woods D, Titball RW, Beacham I, Peak I, Keim P, Nierman WC, Tan P
PMID: 20368977
Proceedings of the National Academy of Sciences of the United States of America. 2010-03-02; 107.9: 4371-6.
Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics
Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM
PMID: 20142485
Journal of bacteriology. 2010-03-01; 192.6: 1685-99.
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium
Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J
PMID: 20061468
Genome biology and evolution. 2010-01-22; 2.102-16.
Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements
Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, Schutzer SE, Keim P, Nierman WC
PMID: 20333227
PloS one. 2010-01-22; 5.1: e8842.
Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7
Roy PH, Tetu SG, Larouche A, Elbourne L, Tremblay S, Ren Q, Dodson R, Harkins D, Shay R, Watkins K, Mahamoud Y, Paulsen IT
PMID: 20107499

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