GCID Publications

Nucleic acids research. 2012-12-01; 40.22: e172.
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
Fouts DE, Brinkac L, Beck E, Inman J, Sutton G
PMID: 22904089
Nature medicine. 2012-12-01; 18.12: 1820-6.
A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease
Graham RL, Becker MM, Eckerle LD, Bolles M, Denison MR, Baric RS
PMID: 23142821
Methods (San Diego, Calif.). 2012-12-01; 58.4: 392-9.
Studying protein complexes by the yeast two-hybrid system
Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P
PMID: 22841565
The Journal of general virology. 2012-12-01; 93.Pt 12: 2584-9.
Genomic reassortment of influenza A virus in North American swine, 1998-2011
Nelson MI, Detmer SE, Wentworth DE, Tan Y, Schwartzbard A, Halpin RA, Stockwell TB, Lin X, Vincent AL, Gramer MR, Holmes EC
PMID: 22993190
Virology journal. 2012-11-06; 9.261.
Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing
Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB
PMID: 23131097
Journal of bacteriology. 2012-11-01; 194.22: 6356-7.
Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates
Varga JJ, Losada L, Zelazny AM, Brinkac L, Harkins D, Radune D, Hostetler J, Sampaio EP, Ronning CM, Nierman WC, Greenberg DE, Holland SM, Goldberg JB
PMID: 23105085
The Journal of general virology. 2012-11-01; 93.Pt 11: 2387-2398.
Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination
Dominguez SR, Sims GE, Wentworth DE, Halpin RA, Robinson CC, Town CD, Holmes KV
PMID: 22837419
PLoS neglected tropical diseases. 2012-10-25; 6.10: e1853.
Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity
Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M, Webster NJ, Vinetz JM, Matthias MA
PMID: 23145189
PLoS pathogens. 2012-10-04; 8.10: e1002851.
Clonality despite sex: the evolution of host-associated sexual neighborhoods in the pathogenic fungus Penicillium marneffei
Henk DA, Shahar-Golan R, Devi KR, Boyce KJ, Zhan N, Fedorova ND, Nierman WC, Hsueh PR, Yuen KY, Sieu TP, Kinh NV, Wertheim H, Baker SG, Day JN, Vanittanakom N, Bignell EM, Andrianopoulos A, Fisher MC
PMID: 23055919
Journal of bacteriology. 2012-10-01; 194.19: 5450.
Genomic insights into the emerging human pathogen Mycobacterium massiliense
Tettelin H, Sampaio EP, Daugherty SC, Hine E, Riley DR, Sadzewicz L, Sengamalay N, Shefchek K, Su Q, Tallon LJ, Conville P, Olivier KN, Holland SM, Fraser CM, Zelazny AM
PMID: 22965080

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