Publications

Genome announcements. 2018-01-25; 6.4:
Whole-Genome Sequences of Zika Virus FLR Strains after Passage in Vero or C6/36 Cells
Moser LA, Oldfield LM, Fedorova N, Puri V, Shrivastava S, Amedeo P, Isom R, Hu L, Durbin A, Rocchi I, Williams T, Tan GS, Shabman RS, Bernard KA, Pickett BE
PMID: 29371358
F1000Research. 2018-01-23; 7.98.
A host subtraction database for virus discovery in human cell line sequencing data
Miller JR, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG
PMID: 31231504
PLoS pathogens. 2018-01-22; 14.1: e1006828.
Identification of a novel protein complex essential for effector translocation across the parasitophorous vacuole membrane of Toxoplasma gondii
Marino ND, Panas MW, Franco M, Theisen TC, Naor A, Rastogi S, Buchholz KR, Lorenzi HA, Boothroyd JC
PMID: 29357375
Clinical and translational gastroenterology. 2018-01-18; 9.1: e132.
Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease
Moustafa A, Li W, Anderson EL, Wong EHM, Dulai PS, Sandborn WJ, Biggs W, Yooseph S, Jones MB, Venter JC, Nelson KE, Chang JT, Telenti A, Boland BS
PMID: 29345635
Oncotarget. 2018-01-12; 9.4: 5044-5057.
Nonlinear mixed effects dose response modeling in high throughput drug screens: application to melanoma cell line analysis
Ding KF, Petricoin EF, Finlay D, Yin H, Hendricks WPD, Sereduk C, Kiefer J, Sekulic A, LoRusso PM, Vuori K, Trent JM, Schork NJ
PMID: 29435161
Nature communications. 2018-01-02; 9.1: 13.
Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla
VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP
PMID: 29296019
Microbiology (Reading, England). 2018-01-01; 164.1: 40-44.
Impact of stress on the gut microbiome of free-ranging western lowland gorillas
Vlčková K, Shutt-Phillips K, Heistermann M, Pafčo B, Petrželková KJ, Todd A, Modrý D, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Gomez A
PMID: 29205130
Nature reviews. Genetics. 2018-01-01; 19.1: 51-62.
Human gene essentiality
Bartha I, di Iulio J, Venter JC, Telenti A
PMID: 29082913
mSystems. 2018-01-01; 3.1:
Correction for Morton et al., "Uncovering the Horseshoe Effect in Microbial Analyses"
Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R
PMID: 29435495
F1000Research. 2018-01-01; 7.297.
A draft genome sequence for the cell line, ISE6
Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG
PMID: 29707202

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