Publications

Microbiome. 2018-11-08; 6.1: 201.
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea
Zhu Q, Dupont CL, Jones MB, Pham KM, Jiang ZD, DuPont HL, Highlander SK
PMID: 30409177
The Journal of allergy and clinical immunology. 2018-11-01; 142.5: 1447-1456.e9.
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Gebretsadik T, Halpin RA, Nelson KE, Moore ML, Anderson LJ, Peebles RS, Das SR, Hartert TV
PMID: 29330010
Diagnostic microbiology and infectious disease. 2018-11-01; 92.3: 253-258.
Sequence heterogeneity of the PenA carbapenemase in clinical isolates of Burkholderia multivorans
Becka SA, Zeiser ET, Marshall SH, Gatta JA, Nguyen K, Singh I, Greco C, Sutton GG, Fouts DE, LiPuma JJ, Papp-Wallace KM
PMID: 29983287
Nature communications. 2018-11-01; 9.1: 4560.
Human antibodies targeting Zika virus NS1 provide protection against disease in a mouse model
Bailey MJ, Duehr J, Dulin H, Broecker F, Brown JA, Arumemi FO, Bermúdez González MC, Leyva-Grado VH, Evans MJ, Simon V, Lim JK, Krammer F, Hai R, Palese P, Tan GS
PMID: 30385750
Journal of virological methods. 2018-11-01; 261.67-70.
Rapid and efficient in vitro excision of BAC sequences from herpesvirus genomes using Cre-mediated recombination
Grzesik P, Ko N, Oldfield LM, Vashee S, Desai PJ
PMID: 30092252
The Plant journal : for cell and molecular biology. 2018-11-01; 96.3: 670-684.
Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping, and Oxford Nanopore technologies
Hoang PNT, Michael TP, Gilbert S, Chu P, Motley TS, Motley ST, Appenroth KJ, Schubert I, Lam E
PMID: 30054939
Scientific reports. 2018-10-26; 8.1: 15843.
Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains
Shrivastava S, Puri V, Dilley KA, Ngouajio E, Shifflett J, Oldfield LM, Fedorova NB, Hu L, Williams T, Durbin A, Amedeo P, Rashid S, Shabman RS, Pickett BE
PMID: 30367096
Cell systems. 2018-10-24; 7.4: 463-467.e6.
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework
Beyter D, Lin MS, Yu Y, Pieper R, Bafna V
PMID: 30268435
mBio. 2018-10-16; 9.5:
Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells
Brown DM, Hixon AM, Oldfield LM, Zhang Y, Novotny M, Wang W, Das SR, Shabman RS, Tyler KL, Scheuermann RH
PMID: 30327438
Antimicrobial agents and chemotherapy. 2018-10-15;
ARGONAUT-I: Activity of cefiderocol (S-649266), a siderophore cephalosporin, against Gram-negative bacteria including carbapenem resistant nonfermenters and Enterobacteriaceae with defined extended-spectrum β-lactamases and carbapenemases
Jacobs MR, Abdelhamed AM, Good CE, Rhoads DD, Hujer KM, Hujer AM, Domitrovic TN, Rudin SD, Richter SS, van Duin D, Kreiswirth BN, Greco C, Fouts DE, Bonomo RA, Antibacterial Resistance Leadership Group(ARLG)
PMID: 30323050

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