Organellar Inserts

To identify insertions of organellar DNA into the nuclear genome, the Mt plastid genome (NC_003119.6) and the Gm mitochondrion assembly (JGI phytozome mitochondrion assembly; 18 scaffolds) were searched against the 8 pseudomolecules plus unanchored BACs. A total of 1,418 insertions into this sequence set were found of which 1,303 were less than 1 kb in length.

The longest insertion was ~12 kb. A total of 738 inserts map to 498 annotated genes, the majority of which have more than one exon. For mitochondrial DNA, 181 inserts were found, of which 162 were less than 500 bp and the largest ~4 kb. Seventy-five of the inserts mapped to 48 genes of which 46 consisted of more than one exon.

Reference end5 end3 Chloroplast Align
AC146565.27 80230 80034 197:5280..5476
AC151525.18 148477 148591 115:52818..52932
AC151738.84 45090 47525 2456:82633..85088
AC158498.3 110300 110242 59:120690..120748
AC202596.23 74209 74502 314:11957..12270
AC202596.23 74610 74691 82:13619..13700
AC202596.23 74779 75428 649:13777..14425
AC202596.23 75534 75653 114:14494..14607
AC202596.23 75741 76192 455:14709..15163
AC202596.23 76225 76475 257:15209..15465
AC202596.23 76554 76722 184:15543..15726
AC225458.11 232307 232230 78:122198..122275
AC225458.11 232455 232381 82:49900..49981
AC225458.11 232456 232551 96:24575..24670
AC225458.11 232549 232604 56:24692..24747
AC225474.24 57852 58402 551:107109..107659
AC225474.24 58460 59768 1309:107718..109026
AC225474.24 59853 60002 150:109111..109260
AC225474.24 60074 60283 210:109332..109541
AC225474.24 60403 60478 76:109661..109736
AC225474.24 60844 61256 413:110102..110514
AC225474.24 61604 61258 347:15984..16330
AC225474.24 61747 61655 93:15839..15931
AC225474.24 62055 61830 214:15543..15756
AC225474.24 62924 62133 794:14672..15465
AC225474.24 63490 62989 502:14106..14607
AC225474.24 64492 63488 1005:3855..4859
AC225474.24 64893 64594 300:3454..3753
AC225474.24 65149 65096 54:3198..3251
AC225474.24 65541 65186 355:2807..3161
AC225474.24 67761 65721 2041:593..2633
AC225474.24 68085 67843 243:269..511
AC225474.24 68273 68170 104:83..186
AC225474.24 68461 68356 106:123928..124033
AC225474.24 71660 68495 3167:120728..123894
AC225479.8 99312 99181 132:5636..5767
AC225479.8 99399 99320 81:5396..5476
AC225479.8 100493 100970 488:5280..5767
AC225507.19 11787 12169 383:100844..101226
AC225507.19 213144 213084 61:34995..35055
AC225517.13 136813 136873 61:34995..35055
AC225518.20 58572 58879 306:94507..94812
AC225526.13 11098 10923 189:15543..15731
AC225526.13 11433 11180 256:15209..15464
AC225526.13 11907 11467 450:14712..15161
AC225526.13 12077 11997 81:14527..14607
AC225526.13 12786 12145 642:13852..14493
AC225526.13 12900 12788 113:13778..13890
AC225526.13 64747 64955 209:110835..111043
AC229701.10 15173 15223 51:130..180
AC229724.12 20938 18826 2113:89098..91210
AC229724.12 47397 48673 1278:92837..94114
AC229724.12 48746 49012 267:94186..94452
AC229724.12 49053 49961 910:94493..95402
AC229724.12 50149 51316 1168:95590..96757
AC229727.11 79017 79125 109:5659..5767
AC233100.9 73525 73426 97:76092..76188
AC233100.9 179082 178927 154:14709..14862
AC233109.8 176950 176799 145:28997..29141
AC233112.6 35262 35208 55:36267..36321
AC233140.9 3319 3491 174:34470..34643
AC233140.9 45074 45273 197:5280..5476
AC233140.9 45281 45412 132:5636..5767
AC233140.9 142871 142813 59:120690..120748
AC233207.1 24 3044 3002:20919..23920
AC233576.3 98113 98477 364:57954..58317
AC233576.3 98576 98871 302:58437..58738
AC233655.2 48805 48745 61:99107..99167
AC233662.1 225750 225948 198:82075..82272
AC233662.1 230864 231062 198:82075..82272
AC233663.2 88741 88940 216:11336..11551
AC233668.2 21674 21732 59:120690..120748
AC233668.2 55586 55785 197:5280..5476
AC233668.2 55793 55924 132:5636..5767
AC233668.2 89629 89801 174:34470..34643
AC233684.2 32486 32686 198:5283..5480
AC233684.2 40013 40088 76:5333..5408
AC233684.2 40103 40318 213:5506..5718
AC233685.2 21712 21630 83:82724..82806
AC233685.2 21926 21709 218:6764..6981
AC233685.2 22082 21928 165:6624..6788
AC233685.2 22344 22135 210:6361..6570
AC233685.2 227498 227271 229:116253..116481
AC233685.2 336469 336331 139:120628..120766
AC233783.1 51051 51219 166:64983..65148
AC235663.4 69218 69163 56:122368..122423
AC235673.7 68406 68349 56:122368..122423
AC235679.1 6296 5978 319:33089..33407
AC235679.1 7721 6303 1418:33432..34849
AC235679.1 8010 7746 265:32822..33086
AC235749.4 19280 19430 151:43049..43199
AC235754.6 49625 49515 111:80971..81081
AC235758.1 89838 89673 167:112069..112235
CU013530.14 6363 6160 204:9307..9510
CU013530.14 104684 108941 4257:19715..23971
CU013530.14 109264 108941 324:117009..117332
CU013530.14 111325 109383 1943:114946..116888
CU013530.14 112354 111385 970:113917..114886
CU013530.14 114751 112477 2275:111520..113794
CU013530.14 115449 114806 645:110821..111465
CU013530.14 116168 115491 678:110102..110779
CU013530.14 116609 116534 76:109661..109736
CU013530.14 116938 116729 210:109332..109541
CU013530.14 117159 117010 150:109111..109260
CU013530.14 118551 117244 1308:107719..109026
CU013530.14 119495 118611 885:106775..107659
CU013530.14 120156 119563 594:106114..106707
CU013530.14 120312 120154 159:105887..106045
CU013530.14 122692 120409 2284:103500..105783
CU179634.6 129368 129504 137:61412..61548
CU179634.6 130962 129530 1435:25879..27313
CU179634.6 131476 131187 289:25356..25644
CU571152.5 105242 104699 544:73319..73862
chr01 177578 177501 78:93286..93363
chr01 193876 194125 265:40992..41256
chr01 199552 199630 79:123952..124030
chr01 241432 241591 165:60326..60490
chr01 304506 304603 102:102254..102355
chr01 322744 322820 77:114764..114840
chr01 332272 332521 265:40992..41256
chr01 337950 338028 79:123952..124030
chr01 389476 389635 165:60326..60490
chr01 391372 391312 61:27311..27371
chr01 391702 391617 86:27023..27108
chr01 391870 391799 72:26857..26928
chr01 392287 392150 138:26433..26570
chr01 392407 392333 75:26312..26386
chr01 392939 392853 87:26189..26275
chr01 397297 397394 102:102254..102355
chr01 420256 420372 118:26019..26136
chr01 420424 420510 87:26189..26275
chr01 420956 421030 75:26312..26386
chr01 421076 421213 138:26433..26570
chr01 421493 421564 72:26857..26928
chr01 421661 421746 86:27023..27108
chr01 421991 422051 61:27311..27371
chr01 423887 423728 165:60326..60490
chr01 462369 462442 74:19416..19489
chr01 474282 474529 248:21081..21328
chr01 474896 474989 94:21708..21801
chr01 657424 657265 165:60326..60490
chr01 897534 897599 66:47916..47981
chr01 1163175 1163045 133:23092..23224
chr01 1163238 1163170 69:15249..15317
chr01 1163240 1163398 159:35487..35645
chr01 1163448 1163577 131:107240..107370
chr01 1163580 1163674 95:51641..51735
chr01 1163771 1163675 97:27032..27128
chr01 2267723 2267533 188:15543..15730
chr01 2482667 2482356 317:107078..107394
chr01 2628045 2627993 53:98541..98593
chr01 2806078 2806029 50:82619..82668
chr01 4259643 4259200 445:24567..25011
chr01 4654371 4654441 71:72873..72943
chr01 4667406 4668020 634:119332..119965
chr01 4813642 4813733 98:122326..122423
chr01 4861970 4861817 154:22824..22977
chr01 4873462 4873624 163:84443..84605
chr01 4891101 4891192 98:122326..122423
chr01 5634696 5634620 77:44249..44325
chr01 5909154 5908875 280:30649..30928
chr01 6060873 6060938 66:49404..49469
chr01 6137833 6138013 181:49310..49490
chr01 6474045 6474284 241:39484..39724
chr01 7410336 7410561 240:76794..77033
chr01 7410594 7410731 141:77038..77178
chr01 7474387 7474441 55:88547..88601
chr01 7474450 7474543 94:104458..104551
chr01 8372734 8372676 59:120690..120748
chr01 10109827 10109916 90:65130..65219
chr01 10409463 10409986 524:21749..22272
chr01 11639264 11639080 187:15545..15731
chr01 11639595 11639344 252:15214..15465
chr01 11640070 11639598 473:13777..14249
chr01 11640228 11640124 105:13619..13723
chr01 11640479 11640293 187:13368..13554
chr01 11641088 11640787 308:12774..13081
chr01 11641880 11641126 787:11950..12736
chr01 11791114 11791222 109:107718..107826
chr01 11791243 11791330 85:107811..107895
chr01 11792761 11792539 229:26526..26754
chr01 12304751 12304809 59:120690..120748
chr01 12420304 12420507 199:85199..85397
chr01 12555832 12555774 59:120690..120748
chr01 12567270 12567212 59:120690..120748
chr01 13357945 13358031 87:16929..17015
chr01 13358035 13358100 66:17439..17504
chr01 13509455 13509329 118:74894..75011
chr01 13650095 13650171 77:20030..20106
chr01 13685914 13685856 59:120690..120748
chr01 15214131 15214283 153:87155..87307
chr01 15214276 15214566 291:87326..87616
chr01 15214565 15214697 136:74972..75107
chr01 15214695 15214909 215:52668..52882
chr01 17328003 17327390 612:47466..48077
chr01 17328214 17328067 148:47255..47402
chr01 17767406 17767347 60:122360..122419
chr01 18105868 18105776 93:81113..81205
chr01 19150148 19149908 240:40095..40334
chr01 19420396 19419912 498:115540..116037
chr01 19453817 19454307 488:5280..5767
chr01 20164454 20164576 123:54605..54727
chr01 20808176 20808374 197:5280..5476
chr01 20808382 20808513 132:5636..5767
chr01 21144601 21144656 56:122368..122423
chr01 21390919 21390974 56:108434..108489
chr01 21496115 21495951 172:71780..71951
chr01 21760104 21760376 273:119894..120166
chr01 21777890 21778109 221:111758..111978
chr01 22366951 22367528 577:101010..101586
chr01 22367664 22367537 128:49595..49722
chr01 22445131 22445000 132:5636..5767
chr01 22445335 22445139 197:5280..5476
chr01 22546585 22546794 220:1167..1386
chr01 22571316 22571399 84:33658..33741
chr01 22587090 22587017 74:50808..50881
chr01 22811100 22811347 248:32516..32763
chr01 23003837 23002476 1354:122541..123894
chr01 23354802 23354636 165:31586..31750
chr01 23850884 23850714 171:104299..104469
chr01 24042764 24043296 533:30516..31048
chr01 24637283 24637443 162:5299..5460
chr01 24702439 24702376 64:122360..122423
chr01 26002167 26002020 148:104824..104971
chr01 26350073 26350220 148:104824..104971
chr01 27062224 27062108 117:113917..114033
chr01 27100197 27099842 356:114974..115329
chr01 27586837 27587038 202:26700..26901
chr01 27949552 27949358 189:41921..42109
chr01 27949798 27949630 170:41676..41845
chr01 28038131 28037937 189:41921..42109
chr01 28038377 28038209 170:41676..41845
chr01 28217796 28218043 246:74899..75144
chr01 28324920 28324764 158:119896..120053
chr01 28897451 28897708 257:12016..12272
chr01 28897991 28897726 266:71502..71767
chr01 29039350 29039615 266:71502..71767
chr01 29039890 29039633 257:12016..12272
chr01 30235173 30235096 78:3876..3953
chr01 30377172 30376987 186:37400..37585
chr01 30377540 30377309 232:37014..37245
chr01 31082083 31082207 125:20889..21013
chr01 31101260 31101404 145:32519..32663
chr01 31101412 31101476 65:32699..32763
chr01 31511823 31511768 56:27350..27405
chr01 31542306 31542416 111:87558..87668
chr01 32505650 32505848 208:9652..9859
chr01 32573061 32572452 614:17850..18463
chr02 427567 427898 336:21078..21413
chr02 752722 752962 253:17435..17687
chr02 1534599 1533819 781:72836..73616
chr02 2127924 2127856 69:6845..6913
chr02 3293124 3293247 124:5357..5480
chr02 4974563 4974827 252:89749..90000
chr02 4974880 4974968 89:90018..90106
chr02 5562231 5562159 73:2539..2611
chr02 5992590 5992278 319:80359..80677
chr02 6444125 6443412 718:37826..38543
chr02 6451132 6450763 368:37463..37830
chr02 6451547 6451313 235:37009..37243
chr02 6452010 6451591 420:36550..36969
chr02 6452026 6451893 134:36474..36607
chr02 6711161 6710611 551:73492..74042
chr02 6897492 6897802 312:70368..70679
chr02 7277521 7277435 87:49055..49141
chr02 7277711 7277525 182:48825..49006
chr02 7619106 7619303 197:50456..50652
chr02 7654469 7654668 200:47175..47374
chr02 7742875 7743096 218:47737..47954
chr02 9632367 9632316 52:122368..122419
chr02 10789891 10789977 93:122327..122419
chr02 10882861 10882757 106:24760..24865
chr02 10943434 10943520 93:122327..122419
chr02 11880394 11880339 56:67478..67533
chr02 12192140 12192081 60:110712..110771
chr02 12672092 12671905 190:76733..76922
chr02 13542475 13542607 133:69161..69293
chr02 14002626 14002555 72:27069..27140
chr02 14573079 14573006 74:17678..17751
chr02 14588511 14588436 76:13777..13852
chr02 14588620 14588565 56:13668..13723
chr02 14588866 14588680 187:13368..13554
chr02 14776680 14776738 59:9656..9714
chr02 14776792 14776738 55:14235..14289
chr02 14869868 14869662 213:120866..121078
chr02 14934409 14934189 221:88359..88579
chr02 15369668 15369806 139:61469..61607
chr02 15410749 15410923 175:36433..36607
chr02 15410806 15410979 174:36550..36723
chr02 15591221 15591707 488:5280..5767
chr02 15614951 15614860 98:122326..122423
chr02 16950360 16950236 125:5636..5760
chr02 16950564 16950368 197:5280..5476
chr02 17344712 17344635 78:73603..73680
chr02 17344818 17344711 108:73473..73580
chr02 17471756 17471620 137:70175..70311
chr02 18349924 18350161 238:77787..78024
chr02 18893809 18893743 67:96496..96562
chr02 19583769 19583830 63:50712..50774
chr02 19583832 19583902 72:24939..25010
chr02 19823205 19824764 1571:50593..52163
chr02 20558970 20559080 111:34770..34880
chr02 20622338 20622224 115:91153..91267
chr02 20735639 20735525 115:91153..91267
chr02 21972128 21971794 335:79848..80182
chr02 22034676 22034808 134:10876..11009
chr02 22853641 22854202 568:87060..87627
chr02 22889370 22889931 568:87060..87627
chr02 23333853 23334046 193:61832..62024
chr02 23353313 23353245 69:100682..100750
chr02 24271861 24272230 376:98483..98858
chr02 24372971 24372880 98:122326..122423
chr02 24456467 24456315 153:33430..33582
chr02 24667156 24667101 56:73476..73531
chr02 24693969 24693899 71:27900..27970
chr02 24695053 24694940 120:27769..27888
chr02 26103668 26103907 240:20960..21199
chr02 26109222 26109125 99:65034..65132
chr02 26175130 26175035 98:11454..11551
chr02 26393611 26393834 224:80663..80886
chr02 27065992 27065500 493:81665..82157
chr02 27108470 27108543 74:28456..28529
chr02 27108473 27108360 114:57305..57418
chr02 27108806 27108628 179:47123..47301
chr02 27109453 27108806 648:44358..45005
chr02 28143842 28143894 53:121235..121287
chr02 28147287 28147489 199:121315..121513
chr02 28148913 28149289 376:120692..121067
chr02 28148914 28147668 1249:121567..122815
chr02 28149434 28149319 117:77002..77118
chr02 28149582 28149435 147:95229..95375
chr02 30515215 30515165 51:58639..58689
chr02 30951860 30952064 206:39599..39804
chr02 31488143 31488200 59:120690..120748
chr02 31881277 31881659 383:100844..101226
chr02 32608330 32608662 333:47068..47400
chr02 32705549 32705601 52:92995..93046
chr02 32708979 32709113 135:92899..93033
chr02 32810266 32810215 52:6421..6472
chr02 32860723 32860235 488:5280..5767
chr02 33578799 33579282 485:5283..5767
chr02 33597115 33597355 240:120609..120848
chr02 33664033 33664112 80:50513..50592
chr02 33664180 33664110 71:117542..117612
chr02 33664227 33664338 112:60908..61019
chr02 33664441 33664516 76:61666..61741
chr03 267174 267049 126:5642..5767
chr03 267371 267174 197:5280..5476
chr03 1148257 1148125 129:109129..109257
chr03 1306147 1306479 333:80804..81136
chr03 1408322 1408204 119:94186..94304
chr03 1463157 1463517 363:5405..5767
chr03 1524090 1524515 427:96880..97306
chr03 2545947 2546013 68:36226..36293
chr03 3294961 3294882 78:110401..110478
chr03 3296120 3296016 112:110402..110513
chr03 3301558 3301319 240:271..510
chr03 3532350 3532272 79:89099..89177
chr03 4006152 4006096 57:610..666
chr03 4471882 4471810 73:117009..117081
chr03 4472112 4471995 119:116772..116890
chr03 5270456 5270134 333:92558..92890
chr03 5270622 5270522 96:92385..92480
chr03 5307568 5307246 333:92558..92890
chr03 5307734 5307634 96:92385..92480
chr03 5533681 5533764 84:92386..92469
chr03 5534835 5535150 312:92789..93100
chr03 5538929 5539044 116:92386..92501
chr03 5539143 5539293 151:92745..92895
chr03 5539308 5539473 163:92934..93096
chr03 5541635 5541728 94:92390..92483
chr03 5545356 5545436 81:92389..92469
chr03 5619645 5619499 147:95799..95945
chr03 5639645 5639587 59:120690..120748
chr03 6762572 6762951 379:74937..75315
chr03 6787751 6787859 109:72766..72874
chr03 7326563 7326634 72:21978..22049
chr03 7371724 7371831 108:25837..25944
chr03 7967480 7967404 77:59788..59864
chr03 8206924 8207001 78:59697..59774
chr03 8456122 8455959 168:27866..28033
chr03 8483886 8483836 51:30234..30284
chr03 8484020 8483929 92:26344..26435
chr03 8484081 8484023 59:89481..89539
chr03 8726346 8726479 134:78042..78175
chr03 8726568 8726891 324:78266..78589
chr03 8726888 8727169 283:8008..8290
chr03 8727448 8728064 617:77408..78024
chr03 10041895 10041825 66:95140..95205
chr03 10078404 10078461 58:74712..74769
chr03 10078627 10078458 182:60353..60534
chr03 10189551 10189608 58:74712..74769
chr03 10189774 10189605 182:60353..60534
chr03 10199180 10199237 58:74712..74769
chr03 10199310 10199234 76:60459..60534
chr03 10199387 10199314 76:60353..60428
chr03 10239398 10239456 59:120690..120748
chr03 10271676 10271513 164:978..1141
chr03 10328536 10328345 187:91790..91976
chr03 10402875 10402816 60:74105..74164
chr03 11496205 11496334 130:80115..80244
chr03 11682255 11681929 328:45683..46010
chr03 11682493 11682344 150:45446..45595
chr03 11683140 11682519 622:117811..118432
chr03 11683140 11683238 99:62026..62124
chr03 11728181 11727940 242:106775..107016
chr03 11729069 11728249 821:105887..106707
chr03 11734879 11729166 5714:100070..105783
chr03 11734886 11739997 5113:23417..28529
chr03 11740075 11745988 5914:28607..34520
chr03 11745985 11746599 615:118577..119191
chr03 11746736 11749387 2653:119328..121980
chr03 11749385 11751166 1782:39049..40830
chr03 11751223 11751795 573:40887..41459
chr03 11752012 11752189 178:41676..41853
chr03 11752257 11752541 285:41921..42205
chr03 11752854 11752535 320:117009..117328
chr03 11754917 11752973 1945:114946..116890
chr03 11755946 11754977 970:113917..114886
chr03 11756575 11756069 507:113288..113794
chr03 13168571 13168386 186:78351..78536
chr03 14159120 14158687 440:84982..85421
chr03 14169103 14168678 426:84491..84916
chr03 14177160 14176936 225:22736..22960
chr03 14230748 14230682 67:76117..76183
chr03 15003992 15004211 223:44372..44594
chr03 15792875 15792952 78:87127..87204
chr03 15909763 15909682 82:95591..95672
chr03 15910478 15909939 536:94867..95402
chr03 15910882 15910498 383:94493..94875
chr03 15911056 15910917 139:94314..94452
chr03 15911131 15911049 83:94186..94268
chr03 15911425 15911182 243:93872..94114
chr03 16310837 16310779 59:120690..120748
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chr08 9017121 9017070 52:42159..42210
chr08 9017639 9017447 192:41921..42112
chr08 9017884 9017714 171:41676..41846
chr08 9018359 9018105 250:41210..41459
chr08 9625800 9626095 295:52184..52478
chr08 9963211 9963385 175:26092..26266
chr08 9966289 9967490 1207:26262..27468
chr08 9967620 9967535 81:70600..70680
chr08 10512747 10512822 76:88636..88711
chr08 10534405 10534695 291:92685..92975
chr08 10781036 10780964 73:2539..2611
chr08 11289988 11289935 54:63307..63360
chr08 11687235 11687875 653:58850..59502
chr08 11687924 11688233 310:59555..59864
chr08 11688516 11689269 754:60091..60844
chr08 11689316 11689482 167:60891..61057
chr08 11689539 11689688 150:61114..61263
chr08 11775934 11776112 179:38213..38391
chr08 12689249 12689307 59:120690..120748
chr08 13294517 13295001 488:5280..5767
chr08 13482974 13481716 1258:98255..99512
chr08 14659810 14659761 50:70704..70753
chr08 14660112 14659811 297:70292..70588
chr08 14660113 14660422 313:1581..1893
chr08 15159913 15160405 488:5280..5767
chr08 15377601 15377518 84:6932..7015
chr08 16385478 16385540 63:122361..122423
chr08 16431770 16431708 63:122361..122423
chr08 16565429 16565348 82:80823..80904
chr08 16565634 16565514 124:80581..80704
chr08 17483825 17484076 253:16623..16875
chr08 18745611 18745553 59:39014..39072
chr08 18746008 18745686 323:38549..38871
chr08 19074750 19074809 60:122360..122419
chr08 19092307 19092517 202:14091..14292
chr08 20196757 20196889 136:66921..67056
chr08 20648634 20648408 227:32353..32579
chr08 20677464 20677280 184:58587..58770
chr08 21145480 21145419 63:12184..12246
chr08 21844450 21844757 319:59041..59359
chr08 22460813 22460901 89:72195..72283
chr08 22461208 22461013 196:100462..100657
chr08 22735094 22735424 331:44134..44464
chr08 23052253 23052424 173:62405..62577
chr08 23279449 23279541 99:122325..122423
chr08 23327282 23327621 341:5280..5620
chr08 23424772 23424714 59:120690..120748
chr08 23663039 23662887 153:8590..8742
chr08 23843891 23844379 488:5280..5767
chr08 24101746 24101955 207:5280..5486
chr08 24102103 24102240 139:5629..5767
chr08 24295518 24295381 139:5629..5767
chr08 24349233 24349024 209:104829..105037
chr08 24549049 24549255 199:33822..34020
chr08 25391175 25391644 472:107854..108325
chr08 25677895 25678007 113:95682..95794
chr08 25953122 25953067 56:112780..112835
chr08 25964446 25964393 54:105685..105738
chr08 26324799 26324881 83:49491..49573
chr08 26324878 26325048 171:50626..50796
chr08 26967364 26967300 65:97281..97345
chr08 26968962 26969145 186:13369..13554
chr08 26969207 26969299 93:13631..13723
chr08 26969348 26969659 312:13777..14088
chr08 26969658 26969942 283:14137..14419
chr08 26970152 26970274 134:14710..14843
chr08 27075410 27075607 197:5280..5476
chr08 27075615 27075743 129:5636..5764
chr08 27120032 27120293 268:62259..62526
chr08 27238581 27238665 85:111551..111635
chr08 27651809 27651636 173:80966..81138
chr08 27912906 27913270 365:123250..123614
chr08 29368490 29368251 240:32516..32755
chr08 29653077 29653158 82:120702..120783
chr08 29653197 29653637 446:120909..121354
chr08 29653645 29654086 440:121482..121921
chr08 29671914 29671617 298:41007..41304
chr08 29827407 29827343 65:115379..115443
chr08 30018111 30018351 242:107738..107979
chr08 30064242 30064329 94:122326..122419
chr08 30392465 30392636 173:62405..62577
chr08 30882975 30883089 115:91153..91267
chr08 31574428 31574484 57:62211..62267
Reference end5 end3 Chloroplast Align
AC146565.27 132041 132120 scaffold_1346:360..439
AC151525.18 26872 26939 scaffold_597:2846..2913
AC151738.84 173208 172777 scaffold_1107:578..1009
AC158498.3 173208 172777 scaffold_1346:1784..2215
AC202596.23 63172 62741 scaffold_1107:578..1009
AC202596.23 63172 62741 scaffold_1346:1784..2215
AC202596.23 101221 101652 scaffold_1107:578..1009
AC202596.23 101221 101652 scaffold_1346:1784..2215
AC202596.23 332715 332612 scaffold_773:6173..6276
AC202596.23 332877 332784 scaffold_773:6037..6130
AC202596.23 184134 184216 scaffold_597:3652..3735
AC225458.11 111431 111507 scaffold_1218:1542..1618
AC225458.11 129820 129735 scaffold_1346:660..745
AC225458.11 130232 130175 scaffold_1346:248..305
AC225458.11 130408 130291 scaffold_1346:75..193
AC225474.24 194454 194208 scaffold_1183:2404..2654
AC225474.24 243160 241090 scaffold_1346:1215..3272
AC225474.24 256810 256914 scaffold_773:6379..6485
AC225474.24 278412 279873 scaffold_177:7498..8956
AC225474.24 278412 279873 scaffold_85:60278..61736
AC225474.24 301821 301184 scaffold_597:7844..8480
AC225474.24 302568 301914 scaffold_597:7101..7755
AC225474.24 304215 304323 scaffold_773:2135..2248
AC225474.24 304342 304478 scaffold_773:2293..2434
AC225474.24 318706 318636 scaffold_668:5589..5659
AC225474.24 318778 318727 scaffold_668:5546..5597
AC225474.24 321059 320620 scaffold_1212:259..689
AC225474.24 321059 320620 scaffold_1218:3299..3729
AC225474.24 323378 321122 scaffold_1218:1002..3252
AC225474.24 332850 332604 scaffold_1183:2404..2654
AC225474.24 347912 350365 scaffold_1366:13..2475
AC225474.24 350448 350700 scaffold_1366:2561..2812
AC225474.24 350758 350981 scaffold_1366:2913..3132
AC225474.24 352010 351871 scaffold_177:8972..9116
AC225474.24 352010 351871 scaffold_85:61752..61896
AC225479.8 360850 359388 scaffold_177:7498..8956
AC225479.8 360850 359388 scaffold_85:60278..61736
AC225479.8 364963 364754 scaffold_1353:4046..4253
AC225507.19 372091 372195 scaffold_773:6379..6485
AC225507.19 391239 388344 scaffold_1346:1182..4042
AC225517.13 392359 391247 scaffold_1346:4..1115
AC225518.20 394612 393976 scaffold_597:7844..8480
AC225526.13 395359 394705 scaffold_597:7101..7755
AC225526.13 397006 397114 scaffold_773:2135..2248
AC225526.13 397133 397269 scaffold_773:2293..2434
AC225526.13 402356 402565 scaffold_1353:4046..4253
AC225526.13 406469 407931 scaffold_177:7498..8956
AC225526.13 406469 407931 scaffold_85:60278..61736
AC225526.13 414825 417278 scaffold_1366:13..2475
AC229701.10 417361 417614 scaffold_1366:2561..2812
AC229724.12 417672 417895 scaffold_1366:2913..3132
AC229724.12 418924 418785 scaffold_177:8972..9116
AC229724.12 418924 418785 scaffold_85:61752..61896
AC229724.12 421004 422116 scaffold_1346:4..1115
AC229724.12 422124 425019 scaffold_1346:1182..4042
AC229727.11 433945 433747 scaffold_1353:24..231
AC233100.9 442521 442577 scaffold_773:1424..1479
AC233100.9 454026 457614 scaffold_1212:1032..4621
AC233109.8 464477 464573 scaffold_597:2623..2715
AC233112.6 473542 473621 scaffold_773:1406..1485
AC233140.9 655696 658556 scaffold_1346:1215..4042
AC233140.9 674808 674704 scaffold_773:6379..6485
AC233140.9 681939 682148 scaffold_1353:4046..4253
AC233140.9 686057 687518 scaffold_177:7498..8956
AC233207.1 686057 687518 scaffold_85:60278..61736
AC233576.3 694417 696872 scaffold_1366:13..2475
AC233576.3 696955 697207 scaffold_1366:2561..2812
AC233655.2 697265 697488 scaffold_1366:2913..3132
AC233662.1 10667552 10667629 scaffold_1107:2664..2742
AC233662.1 10667552 10667629 scaffold_1346:3870..3948
AC233663.2 10667552 10667629 scaffold_668:1657..1735
AC233668.2 23661797 23661720 scaffold_1107:1165..1242
AC233668.2 23661797 23661720 scaffold_1346:2371..2448
AC233668.2 23661797 23661720 scaffold_668:158..235
AC233668.2 24139376 24139428 scaffold_1761:2898..2950
AC233684.2 24139376 24139428 scaffold_1809:2539..2591
AC233684.2 27364293 27364047 scaffold_1218:2607..2853
AC233684.2 31543890 31544359 scaffold_773:328..773
AC233685.2 31545211 31545078 scaffold_1356:1901..2034
AC233685.2 32137383 32137296 scaffold_597:1222..1309
AC233685.2 5462430 5462265 scaffold_597:6605..6769
AC233685.2 5462522 5462422 scaffold_597:6457..6557
AC233685.2 22453036 22453135 scaffold_1212:46..145
AC233685.2 22453036 22453135 scaffold_1218:3086..3185
AC233783.1 25088423 25088347 scaffold_773:6173..6249
AC235663.4 25108111 25108035 scaffold_773:6173..6249
AC235673.7 3244521 3244720 scaffold_773:558..756
AC235679.1 9214900 9215005 scaffold_1212:1217..1321
AC235679.1 9214900 9215005 scaffold_1218:4257..4361
AC235679.1 10078529 10078618 scaffold_1107:1611..1702
AC235749.4 10078529 10078618 scaffold_1346:2817..2908
AC235754.6 10078529 10078618 scaffold_668:604..695
AC235758.1 10189676 10189765 scaffold_1107:1611..1702
CU013530.14 10189676 10189765 scaffold_1346:2817..2908
CU013530.14 10189676 10189765 scaffold_668:604..695
CU013530.14 10199314 10199378 scaffold_1107:1636..1702
CU013530.14 10199314 10199378 scaffold_1346:2842..2908
CU013530.14 10199314 10199378 scaffold_668:629..695
CU013530.14 11737902 11738020 scaffold_1346:75..193
CU013530.14 11738492 11738577 scaffold_1346:660..745
CU013530.14 11738780 11738840 scaffold_1346:990..1050
CU013530.14 11755023 11755099 scaffold_1218:1542..1618
CU013530.14 18762508 18762692 scaffold_1212:334..518
CU013530.14 18762508 18762692 scaffold_1218:3374..3558
CU013530.14 20950458 20950373 scaffold_597:1766..1851
CU013530.14 22053610 22053660 scaffold_1107:1474..1524
CU013530.14 22053610 22053660 scaffold_1346:2680..2730
CU013530.14 22053610 22053660 scaffold_668:467..517
CU013530.14 22053824 22053734 scaffold_1809:3656..3746
CU179634.6 27813824 27813748 scaffold_1183:4371..4447
CU179634.6 27813893 27813841 scaffold_597:4582..4634
CU179634.6 29407439 29407712 scaffold_773:5609..5880
CU571152.5 33585095 33585207 scaffold_1356:1974..2086
chr01 35857665 35857594 scaffold_1212:4260..4331
chr01 36611554 36611652 scaffold_1366:1946..2044
chr01 37200693 37200792 scaffold_668:5648..5748
chr01 42590207 42590283 scaffold_1218:1542..1618
chr01 604071 603980 scaffold_1346:75..166
chr01 1469936 1470016 scaffold_1212:2915..2995
chr01 2621999 2622083 scaffold_597:453..537
chr01 6908151 6908078 scaffold_1212:567..641
chr01 6908151 6908078 scaffold_1218:3607..3681
chr01 10854014 10854075 scaffold_1107:1677..1738
chr01 10854014 10854075 scaffold_1346:2883..2944
chr01 10854014 10854075 scaffold_668:670..731
chr01 15014693 15014857 scaffold_1809:3583..3742
chr01 15153883 15153807 scaffold_1218:1542..1618
chr01 17488513 17488261 scaffold_1212:3924..4186
chr01 18499337 18499141 scaffold_1218:2178..2386
chr01 18624501 18624305 scaffold_1218:2178..2386
chr01 39422349 39422463 scaffold_1366:2934..3048
chr01 41514673 41514570 scaffold_177:10381..10484
chr01 41514673 41514570 scaffold_597:7153..7256
chr01 41514673 41514570 scaffold_85:11644..11747
chr01 41514673 41514570 scaffold_85:39129..39232
chr01 41514673 41514570 scaffold_85:63161..63264
chr01 45097060 45097109 scaffold_597:7429..7478
chr01 45184166 45184117 scaffold_668:6508..6557
chr01 45354297 45354415 scaffold_1346:75..193
chr01 45354887 45354972 scaffold_1346:660..745
chr01 45355175 45355235 scaffold_1346:990..1050
chr01 1874578 1874482 scaffold_597:2623..2715
chr01 2654599 2654655 scaffold_177:9947..10003
chr01 2654599 2654655 scaffold_597:6719..6775
chr01 2654599 2654655 scaffold_85:11210..11266
chr01 2654599 2654655 scaffold_85:38695..38751
chr01 2654599 2654655 scaffold_85:62727..62783
chr01 13064612 13064703 scaffold_773:6264..6355
chr01 13988775 13988897 scaffold_597:7844..7963
chr01 34000837 34000619 scaffold_1212:2610..2828
chr01 38468015 38468091 scaffold_1218:1542..1618
chr01 41231309 41231189 scaffold_1183:4107..4227
chr01 1069953 1069896 scaffold_177:2942..2999
chr01 1069953 1069896 scaffold_607:1988..2045
chr01 6463943 6464015 scaffold_1366:2693..2765
chr01 8120267 8120736 scaffold_773:328..773
chr01 8141079 8140965 scaffold_1356:3061..3175
chr01 8142161 8141566 scaffold_1356:1901..2472
chr01 9814366 9814086 scaffold_597:5762..6043
chr01 10256022 10256156 scaffold_177:8581..8714
chr01 10256022 10256156 scaffold_85:10014..10147
chr01 10256022 10256156 scaffold_85:37500..37633
chr01 10256022 10256156 scaffold_85:61361..61494
chr01 1844468 1844224 scaffold_1212:2282..2527
chr01 5336116 5336192 scaffold_1218:1542..1618
chr01 6570799 6570689 scaffold_1183:4120..4230
chr01 7982300 7982357 scaffold_1218:2801..2858
chr01 29736752 29736692 scaffold_1346:990..1050
chr01 34159823 34159625 scaffold_597:7556..7755
chr01 36255012 36255250 scaffold_1761:3266..3504
chr01 36255012 36255250 scaffold_1809:2907..3145
chr01 37482194 37482121 scaffold_1346:330..403
chr01 9966455 9966570 scaffold_1346:75..190
chr01 9966633 9966690 scaffold_1346:248..305
chr01 9967025 9967130 scaffold_1346:640..745
chr01 9967333 9967393 scaffold_1346:990..1050
chr01 10150296 10150092 scaffold_1183:3920..4125
chr01 11688755 11688915 scaffold_1809:3587..3742
chr01 14651796 14651866 scaffold_773:4891..4960
chr01 31747472 31747742 scaffold_1366:1510..1780
chr01 32301107 32300979 scaffold_1218:30..158