HMM Summary Page: TIGR03186
| Accession | TIGR03186 |
| Name | AKGDH_not_PDH |
| Function | alpha-ketoglutarate dehydrogenase |
| Gene Symbol | mdeB |
| Trusted Cutoff | 1408.30 |
| Domain Trusted Cutoff | 1408.30 |
| Noise Cutoff | 1356.40 |
| Domain Noise Cutoff | 1356.40 |
| Isology Type | exception |
| HMM Length | 889 |
| Author | Haft DH |
| Entry Date | Dec 4 2006 4:42PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| References | RN [1] RM PMID: 9190812 RT Molecular characterization of the mde operon involved in L-methionine catabolism of Pseudomonas putida. RA Inoue H, Inagaki K, Eriguchi SI, Tamura T, Esaki N, Soda K, Tanaka H RL J Bacteriol. 1997 Jun;179(12):3956-62. |