| Accession | TIGR00335 |
| Name | primase_sml |
| Function | putative DNA primase, eukaryotic-type, small subunit |
| Trusted Cutoff | 143.50 |
| Domain Trusted Cutoff | 143.50 |
| Noise Cutoff | 81.10 |
| Domain Noise Cutoff | 81.10 |
| Isology Type | equivalog |
| HMM Length | 324 |
| Mainrole Category | DNA metabolism |
| Subrole Category | DNA replication, recombination, and repair |
| Gene Ontology Term | GO:0003896: DNA primase activity molecular_function |
| | GO:0005658: alpha DNA polymerase:primase complex cellular_component |
| | GO:0006269: DNA replication, synthesis of RNA primer biological_process |
| Author | Haft DH |
| Entry Date | Apr 20 1999 2:09PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | Archaeal members differ substantially from eukaryotic members and should be considered putative pending experimental evidence. The protein is universal and single copy among completed archaeal and eukarotic genomes to date. DNA primase creates RNA primers needed for DNA replication.
This HMM is named putative because the assignment is putative for archaeal proteins. Eukaryotic proteins scoring above the trusted cutoff can be considered authentic.
|
| References | SE TIGR
GA hmmls
AL clustalw, belvu, seaview
DR HAMAP; MF_00700; 32 of 38 |
