Genome Property Definition Page
Accession | GenProp1057 |
Name | radical SAM/SPASM system GeoRSP |
Type | SYSTEM |
Description | This Genome Property represents a functional cassette (with unknown boundaries) in several species of Geobacter, in genomic regions that include high-molecular-weight cytochrome c family proteins. The cassette has a PqqD family protein, a radical SAM/SPASM domain protein similar to PqqE, and an additional SPASM domain protein that appears also to have a degenerate radical SAM-like region. Unlike the SynChlorMet system, with similar components, no putative precursor peptide for ribosomal natural product formation has been found. |
Parent Property | GenProp0063: biosynthesis |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
GeoRSP system PqqD family protein | GeoPqqD | YES | TIGR04302 (HMM): GeoRSP system PqqD family protein | |
GeoRSP system SPASM domain protein | GeoSPAS | YES | TIGR04304 (HMM): GeoRSP system SPASM domain protein | |
GeoRSP system radical SAM/SPASM protein | GeorSAM | YES | TIGR04303 (HMM): GeoRSP system radical SAM/SPASM protein |
Parent Properties
Accession | Name |
---|---|
GenProp0063 | biosynthesis |
Sibling Properties
Accession | Name |
---|---|
GenProp0077 | natural products biosynthesis |
GenProp0126 | amino acid biosynthesis |
GenProp0184 | cofactor biosynthesis |
GenProp0185 | nucleotide biosynthesis |
GenProp0186 | storage and structural polymer biosynthesis |
GenProp0197 | protein biosynthesis |
GenProp0219 | spermidine biosynthesis from arginine (via agmatine) |
GenProp0267 | osmolyte biosynthesis |
GenProp0641 | spermidine biosynthesis from putrescine and S-adenosylmethionine |
GenProp0642 | putrescine biosynthesis from arginine utilizing agmatinase |
GenProp0643 | putrescine biosynthesis from arginine via ornithine |
GenProp0644 | putrescine biosynthesis from glutamate via ornithine |
GenProp0645 | putrescine biosynthesis |
GenProp0724 | phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate |
GenProp0738 | agmatine to putrescine via N-carbamoylputrescine |
GenProp0795 | carbohydrate biosynthesis |
GenProp0838 | lipid biosynthesis |
GenProp0909 | capreomycidine biosynthesis |
GenProp0942 | alkane biosynthesis, cyanobacterial |
GenProp1053 | rSAM/selenodomain system |
GenProp1056 | rhizo-twelve system |