Genome Property Definition Page
Accession | GenProp1006 | |
Name | orbivirus protein set | |
Type | SYSTEM | |
Description | This Genome Property collects HMMs that describe characteristic proteins from examples of orbivirus such as bluetongue virus (BTV). These viruses are dsRNA, segmented, and include a number of mammalian pathogens transmitted by arthropod vectors. Note that NS3A from BTV differs from NS3 by starting from an alternate initiator that makes it 13 amino acids shorter. | |
Literature References |
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Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
tubule protein NS1 | Orb_NS1 | YES | PF01718 (HMM): orbivirus non-structural protein NS1, or hydrophobic tubular protein | |
inclusion body matrix protein NS2 | Orb_NS2 | YES | PF04514 (HMM): orbivirus non-structural protein NS2 | |
nonstructural protein NS3/NS3A | Orb_NS3 | YES | PF01616 (HMM): orbivirus NS3 | |
nonstructural protein NS4 | Orb_NS4 | NO | ||
RNA-dependent RNA polymerase VP1 | Orb_VP1 | YES | PF05788 (HMM): orbivirus RNA-dependent RNA polymerase | |
outer capsid protein VP2 | Orb_VP2 | YES | PF00898 (HMM): orbivirus outer capsid protein VP2 | |
inner capsid protein VP3 | Orb_VP3 | YES | PF01700 (HMM): orbivirus VP3 protein | |
capping/transmethylase enzyme VP4 | Orb_VP4 | YES | PF05059 (HMM): orbivirus capping/transmethylase enzyme VP4 | |
outer capsid protein VP5 | Orb_VP5 | YES | PF00901 (HMM): orbivirus outer capsid protein VP5 | |
helicase VP6 | Orb_VP6 | YES | PF01516 (HMM): orbivirus helicase VP6 | |
inner capsid protein VP7 | Orb_VP7 | YES | PF00897 (HMM): orbivirus inner capsid protein VP7 |